Variant report

Variant	rs11127632
Chromosome Location	chr3:78787706-78787707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78787390..78790233-chr3:78791850..78793816,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11127631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083361	0.84[EUR][1000 genomes]
rs13093540	0.86[EUR][1000 genomes]
rs1386431	0.83[EUR][1000 genomes]
rs17016456	0.88[EUR][1000 genomes]
rs2043661	0.88[EUR][1000 genomes]
rs3773232	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3773233	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3773236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3773241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3926199	0.83[EUR][1000 genomes]
rs57373402	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6807536	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78772000-78792200	Weak transcription	HepG2	liver
2	chr3:78783200-78797000	Weak transcription	Fetal Lung	lung
3	chr3:78783800-78803400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:78785600-78787800	Enhancers	HMEC	breast
5	chr3:78785600-78787800	Enhancers	NHDF-Ad	bronchial
6	chr3:78785600-78787800	Enhancers	NHEK	skin
7	chr3:78786800-78788200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:78787000-78788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:78787000-78788000	Enhancers	Osteobl	bone
10	chr3:78787000-78788400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:78787000-78788400	Enhancers	HUVEC	blood vessel
12	chr3:78787200-78787800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:78787200-78787800	Enhancers	HSMM	muscle
14	chr3:78787200-78788000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:78787200-78788000	Enhancers	Fetal Brain Male	brain
16	chr3:78787200-78788800	Enhancers	NH-A	brain
17	chr3:78787400-78788000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:78787400-78788000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:78787400-78791200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:78787400-78802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:78787600-78791200	Weak transcription	Fetal Brain Female	brain
23	chr3:78787600-78792600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:78787600-78794200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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