Variant report

Variant	rs3773241
Chromosome Location	chr3:78783268-78783269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11127631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083361	0.85[EUR][1000 genomes]
rs13093540	0.87[EUR][1000 genomes]
rs1386431	0.82[EUR][1000 genomes]
rs17016456	0.89[EUR][1000 genomes]
rs2043661	0.89[EUR][1000 genomes]
rs3773232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3773233	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3773236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3773244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3926199	0.81[EUR][1000 genomes]
rs57373402	0.86[AMR][1000 genomes]
rs6807536	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78772000-78792200	Weak transcription	HepG2	liver
2	chr3:78778800-78783400	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:78778800-78785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:78778800-78787200	Weak transcription	HSMM	muscle
5	chr3:78780000-78787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:78780600-78785600	Weak transcription	NHDF-Ad	bronchial
7	chr3:78781000-78783600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:78781600-78783600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:78782000-78783600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:78782200-78787000	Weak transcription	Brain Germinal Matrix	brain
11	chr3:78782800-78783400	Enhancers	Osteobl	bone
12	chr3:78782800-78783600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:78782800-78783600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:78782800-78783600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:78782800-78783600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:78782800-78783600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:78783000-78783400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:78783000-78783600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:78783000-78783600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:78783200-78783600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:78783200-78783600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:78783200-78783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:78783200-78797000	Weak transcription	Fetal Lung	lung

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