Variant report

Variant	rs11127878
Chromosome Location	chr3:85140944-85140945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12490315	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490643	0.94[CHB][hapmap];0.82[YRI][hapmap]
rs12497261	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12630455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637719	0.95[CHB][hapmap];0.91[YRI][hapmap]
rs12638015	0.90[CHB][hapmap];0.91[YRI][hapmap]
rs13062591	0.82[CHB][hapmap];0.92[YRI][hapmap]
rs13085411	0.90[CHB][hapmap];0.92[YRI][hapmap]
rs1470797	0.90[CHB][hapmap];0.92[YRI][hapmap]
rs1551213	0.90[CHB][hapmap];0.91[YRI][hapmap]
rs17022526	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1967400	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2062430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4348009	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4856265	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4856267	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4856561	0.82[CEU][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4856562	0.90[CHB][hapmap]
rs58790749	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73125127	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622775	0.87[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs768324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817509	0.90[CHB][hapmap];0.91[YRI][hapmap]
rs9837914	0.85[CEU][hapmap];0.87[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9845394	0.90[CHB][hapmap];0.92[YRI][hapmap]
rs9848082	0.90[CHB][hapmap];0.92[YRI][hapmap]
rs9852851	0.90[CHB][hapmap];0.92[YRI][hapmap]
rs9869285	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85132000-85141600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:85139400-85141600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:85140000-85141600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:85140200-85141200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:85140400-85141600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:85140400-85141600	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links