Variant report
Variant | rs4348009 |
---|---|
Chromosome Location | chr3:85153974-85153975 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11127878 | 0.91[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs12490315 | 0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs12497261 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs12630455 | 0.91[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs12630512 | 0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs17022526 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs1967400 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs2062430 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs4856265 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs4856267 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs4856561 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs58790749 | 0.89[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs61039085 | 0.83[EUR][1000 genomes] |
rs73125127 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs7622775 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs768324 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9837914 | 0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs9869285 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1002058 | chr3:84757044-85389876 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | esv3419993 | chr3:85030343-85663403 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv492289 | chr3:85066623-85319147 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv2753915 | chr3:85071410-85624810 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv877093 | chr3:85101501-85194054 | Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv590897 | chr3:85122624-85187085 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv877094 | chr3:85124697-85253981 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:85151600-85161200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr3:85153000-85168200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |