Variant report

Variant	rs11127908
Chromosome Location	chr3:85869285-85869286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1003985	0.91[AFR][1000 genomes]
rs10511067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10511068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11914525	0.95[CEU][hapmap]
rs11926422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12495178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1448613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1448614	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2325036	0.80[CEU][hapmap]
rs2875529	0.81[EUR][1000 genomes]
rs3902500	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3911063	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs6549055	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs6787851	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs7431895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7613695	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7629375	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9836755	0.86[EUR][1000 genomes]
rs9876664	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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