Variant report

Variant	rs3902500
Chromosome Location	chr3:85883150-85883151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511067	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511068	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11127908	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11914525	0.84[CEU][hapmap]
rs11926422	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12495178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448613	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1448614	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs3911063	0.81[EUR][1000 genomes]
rs6549055	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs6787851	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7431895	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7629375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9836755	0.81[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv10799	chr3:85878639-85884972	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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