Variant report

Variant	rs11128866
Chromosome Location	chr3:17845343-17845344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17843575..17846389-chr3:17850331..17852349,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11128860	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128861	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128862	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128863	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128864	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128865	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11128867	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128868	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11128870	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11916141	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11925066	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11927436	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11927611	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12107652	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044038	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044041	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044050	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044053	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044054	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044072	0.93[ASN][1000 genomes]
rs28456004	0.93[ASN][1000 genomes]
rs56726310	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56777792	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs57816103	0.93[ASN][1000 genomes]
rs58042633	0.93[ASN][1000 genomes]
rs58280814	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60744506	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61601581	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6772619	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6780341	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6785982	0.93[ASN][1000 genomes]
rs6793958	0.93[ASN][1000 genomes]
rs6794148	0.93[ASN][1000 genomes]
rs73168749	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73168750	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73168756	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73168763	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73168777	0.93[ASN][1000 genomes]
rs9849948	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17835200-17847400	Weak transcription	Dnd41	blood
2	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links