Variant report

Variant	rs9849948
Chromosome Location	chr3:17826263-17826264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11128860	1.00[ASN][1000 genomes]
rs11128861	1.00[ASN][1000 genomes]
rs11128862	1.00[ASN][1000 genomes]
rs11128863	1.00[ASN][1000 genomes]
rs11128864	1.00[ASN][1000 genomes]
rs11128865	0.86[ASN][1000 genomes]
rs11128866	0.93[ASN][1000 genomes]
rs11128867	1.00[ASN][1000 genomes]
rs11128868	1.00[ASN][1000 genomes]
rs11128869	1.00[AMR][1000 genomes]
rs11128870	1.00[ASN][1000 genomes]
rs1121174	1.00[AMR][1000 genomes]
rs1121175	1.00[AMR][1000 genomes]
rs11916141	1.00[ASN][1000 genomes]
rs11925066	1.00[ASN][1000 genomes]
rs11925145	1.00[AMR][1000 genomes]
rs11927436	1.00[ASN][1000 genomes]
rs11927611	1.00[ASN][1000 genomes]
rs12107652	1.00[ASN][1000 genomes]
rs12152443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12374023	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1430897	1.00[AMR][1000 genomes]
rs1430898	1.00[AMR][1000 genomes]
rs17044038	1.00[ASN][1000 genomes]
rs17044041	1.00[ASN][1000 genomes]
rs17044050	1.00[ASN][1000 genomes]
rs17044053	1.00[ASN][1000 genomes]
rs17044054	1.00[ASN][1000 genomes]
rs17044072	1.00[ASN][1000 genomes]
rs17200874	1.00[AMR][1000 genomes]
rs17200881	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17200923	1.00[AMR][1000 genomes]
rs17200930	1.00[AMR][1000 genomes]
rs17200937	1.00[AMR][1000 genomes]
rs17200944	1.00[AMR][1000 genomes]
rs17273076	0.83[EUR][1000 genomes]
rs17273083	1.00[AMR][1000 genomes]
rs17273090	1.00[AMR][1000 genomes]
rs17273097	1.00[AMR][1000 genomes]
rs28456004	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56726310	1.00[ASN][1000 genomes]
rs56777792	1.00[ASN][1000 genomes]
rs57816103	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58042633	1.00[ASN][1000 genomes]
rs58280814	1.00[ASN][1000 genomes]
rs60744506	1.00[ASN][1000 genomes]
rs61601581	1.00[ASN][1000 genomes]
rs6772619	1.00[ASN][1000 genomes]
rs6780341	1.00[ASN][1000 genomes]
rs6785982	1.00[ASN][1000 genomes]
rs6786472	0.94[EUR][1000 genomes]
rs6793958	1.00[ASN][1000 genomes]
rs6794148	1.00[ASN][1000 genomes]
rs73168749	1.00[ASN][1000 genomes]
rs73168750	1.00[ASN][1000 genomes]
rs73168756	1.00[ASN][1000 genomes]
rs73168763	1.00[ASN][1000 genomes]
rs73168777	1.00[ASN][1000 genomes]
rs9812274	1.00[AFR][1000 genomes]
rs9841952	1.00[AFR][1000 genomes]
rs992521	1.00[AMR][1000 genomes]
rs992522	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17825800-17828400	Weak transcription	Dnd41	blood

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