Variant report

Variant	rs17200874
Chromosome Location	chr3:17682442-17682443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17677327..17679225-chr3:17680575..17682681,2	K562	blood:
2	chr3:17681918..17684024-chr3:17685231..17687253,2	MCF-7	breast:
3	chr3:17681620..17683339-chr3:17686946..17688450,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11128869	1.00[AMR][1000 genomes]
rs1121174	1.00[AMR][1000 genomes]
rs1121175	1.00[AMR][1000 genomes]
rs11925145	1.00[AMR][1000 genomes]
rs12152443	1.00[AMR][1000 genomes]
rs12374023	1.00[AMR][1000 genomes]
rs1430897	1.00[AMR][1000 genomes]
rs1430898	1.00[AMR][1000 genomes]
rs17200881	1.00[AMR][1000 genomes]
rs17200923	1.00[AMR][1000 genomes]
rs17200930	1.00[AMR][1000 genomes]
rs17200937	1.00[AMR][1000 genomes]
rs17200944	1.00[AMR][1000 genomes]
rs17273048	1.00[AMR][1000 genomes]
rs17273083	1.00[AMR][1000 genomes]
rs17273090	1.00[AMR][1000 genomes]
rs17273097	1.00[AMR][1000 genomes]
rs7427909	1.00[AMR][1000 genomes]
rs7427937	1.00[AMR][1000 genomes]
rs9849948	1.00[AMR][1000 genomes]
rs992521	1.00[AMR][1000 genomes]
rs992522	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:17677600-17686800	Weak transcription	Small Intestine	intestine
7	chr3:17679400-17683000	Enhancers	NHLF	lung
8	chr3:17679800-17682600	Enhancers	HUVEC	blood vessel
9	chr3:17680800-17683000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:17681200-17682600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:17681400-17682800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:17681400-17683200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:17681400-17689800	Weak transcription	Primary T cells from cord blood	blood
14	chr3:17681600-17682800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:17681600-17682800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:17681600-17683000	Enhancers	NHDF-Ad	bronchial
17	chr3:17681600-17683200	Enhancers	Osteobl	bone
18	chr3:17681600-17683800	Weak transcription	HepG2	liver
19	chr3:17681600-17685200	Weak transcription	HSMMtube	muscle
20	chr3:17681600-17685400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:17681600-17686400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:17681600-17686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:17681600-17686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:17681600-17687000	Weak transcription	Brain Angular Gyrus	brain
25	chr3:17681600-17687000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:17682200-17682800	Flanking Active TSS	A549	lung
28	chr3:17682200-17686800	Weak transcription	NHEK	skin
29	chr3:17682400-17682600	Enhancers	HSMM	muscle
30	chr3:17682400-17683200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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