Variant report

Variant	rs17200923
Chromosome Location	chr3:17847427-17847428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17783939..17786639-chr3:17846010..17848069,2	MCF-7	breast:
2	chr3:17841375..17843257-chr3:17846637..17848451,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10510481	0.94[EUR][1000 genomes]
rs11128860	0.94[EUR][1000 genomes]
rs11128861	0.94[EUR][1000 genomes]
rs11128862	0.94[EUR][1000 genomes]
rs11128863	0.94[EUR][1000 genomes]
rs11128864	0.94[EUR][1000 genomes]
rs11128867	0.94[EUR][1000 genomes]
rs11128868	0.94[EUR][1000 genomes]
rs11128869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128870	0.94[EUR][1000 genomes]
rs1121174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916141	0.94[EUR][1000 genomes]
rs11925066	0.94[EUR][1000 genomes]
rs11925145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927436	0.94[EUR][1000 genomes]
rs11927611	0.94[EUR][1000 genomes]
rs12107652	0.94[EUR][1000 genomes]
rs12152443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	1.00[AMR][1000 genomes]
rs1430897	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1430898	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17044038	0.94[EUR][1000 genomes]
rs17044041	0.94[EUR][1000 genomes]
rs17044050	0.94[EUR][1000 genomes]
rs17044053	0.94[EUR][1000 genomes]
rs17044054	0.94[EUR][1000 genomes]
rs17044072	0.89[EUR][1000 genomes]
rs17044097	0.94[EUR][1000 genomes]
rs17044102	0.94[EUR][1000 genomes]
rs17200874	1.00[AMR][1000 genomes]
rs17200881	1.00[AMR][1000 genomes]
rs17200930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273139	0.94[EUR][1000 genomes]
rs56726310	0.94[EUR][1000 genomes]
rs56777792	0.94[EUR][1000 genomes]
rs58042633	0.94[EUR][1000 genomes]
rs58280814	0.94[EUR][1000 genomes]
rs60744506	0.94[EUR][1000 genomes]
rs61601581	0.94[EUR][1000 genomes]
rs6772619	0.94[EUR][1000 genomes]
rs6780341	0.94[EUR][1000 genomes]
rs6785982	0.94[EUR][1000 genomes]
rs6786472	1.00[ASN][1000 genomes]
rs6793958	0.94[EUR][1000 genomes]
rs6794148	0.94[EUR][1000 genomes]
rs73168749	0.94[EUR][1000 genomes]
rs73168750	0.94[EUR][1000 genomes]
rs73168756	0.94[EUR][1000 genomes]
rs73168763	0.94[EUR][1000 genomes]
rs73168777	0.94[EUR][1000 genomes]
rs930147	0.94[EUR][1000 genomes]
rs9849948	1.00[AMR][1000 genomes]
rs992521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:17847000-17848400	Enhancers	Placenta	Placenta
3	chr3:17847200-17848200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:17847400-17847600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:17847400-17848200	Enhancers	Dnd41	blood

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