Variant report

Variant	rs930147
Chromosome Location	chr3:17882489-17882490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:17871984..17874531-chr3:17881448..17883505,2	K562	blood:
2	chr3:17871984..17873814-chr3:17882005..17884877,2	K562	blood:
3	chr3:17586014..17586766-chr3:17882448..17883200,2	MCF-7	breast:
4	chr3:17463498..17465841-chr3:17880192..17882882,2	MCF-7	breast:
5	chr3:17671191..17673216-chr3:17880235..17883064,2	K562	blood:
6	chr3:17472134..17473149-chr3:17882441..17883393,5	K562	blood:
7	chr3:17685895..17687359-chr3:17882432..17883403,5	MCF-7	breast:
8	chr3:17881267..17883846-chr3:17961295..17962825,2	K562	blood:
9	chr3:17300133..17300831-chr3:17882016..17882990,2	MCF-7	breast:
10	chr3:17472139..17473280-chr3:17881966..17883098,4	MCF-7	breast:
11	chr3:17872020..17874995-chr3:17881908..17884294,2	MCF-7	breast:
12	chr3:17454330..17455065-chr3:17882486..17883391,2	K562	blood:
13	chr3:17686325..17687848-chr3:17882370..17883316,8	K562	blood:
14	chr19:1441568..1443357-chr3:17881298..17883115,2	MCF-7	breast:

No data

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10510481	1.00[EUR][1000 genomes]
rs11128860	0.89[EUR][1000 genomes]
rs11128861	0.89[EUR][1000 genomes]
rs11128862	0.89[EUR][1000 genomes]
rs11128863	0.89[EUR][1000 genomes]
rs11128864	0.89[EUR][1000 genomes]
rs11128867	0.89[EUR][1000 genomes]
rs11128868	0.89[EUR][1000 genomes]
rs11128869	0.94[EUR][1000 genomes]
rs11128870	0.89[EUR][1000 genomes]
rs1121174	0.94[EUR][1000 genomes]
rs1121175	0.94[EUR][1000 genomes]
rs11916141	0.89[EUR][1000 genomes]
rs11925066	0.89[EUR][1000 genomes]
rs11925145	1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11927436	0.89[EUR][1000 genomes]
rs11927611	0.89[EUR][1000 genomes]
rs12107652	0.89[EUR][1000 genomes]
rs1430897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044038	0.89[EUR][1000 genomes]
rs17044041	0.89[EUR][1000 genomes]
rs17044050	0.89[EUR][1000 genomes]
rs17044053	0.89[EUR][1000 genomes]
rs17044054	0.89[EUR][1000 genomes]
rs17044072	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17044097	1.00[EUR][1000 genomes]
rs17044102	1.00[EUR][1000 genomes]
rs17200923	0.94[EUR][1000 genomes]
rs17200930	0.94[EUR][1000 genomes]
rs17200937	0.94[EUR][1000 genomes]
rs17200944	0.94[EUR][1000 genomes]
rs17273083	0.94[EUR][1000 genomes]
rs17273090	0.94[EUR][1000 genomes]
rs17273097	0.94[EUR][1000 genomes]
rs17273139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56726310	0.89[EUR][1000 genomes]
rs56777792	0.89[EUR][1000 genomes]
rs58042633	0.89[EUR][1000 genomes]
rs58280814	0.89[EUR][1000 genomes]
rs60744506	0.89[EUR][1000 genomes]
rs61601581	0.89[EUR][1000 genomes]
rs6772619	0.89[EUR][1000 genomes]
rs6780341	0.89[EUR][1000 genomes]
rs6785982	0.89[EUR][1000 genomes]
rs6793958	0.89[EUR][1000 genomes]
rs6794148	0.89[EUR][1000 genomes]
rs73168749	0.89[EUR][1000 genomes]
rs73168750	0.89[EUR][1000 genomes]
rs73168756	0.89[EUR][1000 genomes]
rs73168763	0.89[EUR][1000 genomes]
rs73168777	0.89[EUR][1000 genomes]
rs7645014	1.00[CHB][hapmap]
rs992521	0.94[EUR][1000 genomes]
rs992522	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17873000-17882600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:17879800-17884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:17881600-17882600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:17881600-17883000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:17882000-17882800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:17882000-17883200	Enhancers	Dnd41	blood
7	chr3:17882200-17882800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:17882200-17882800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:17882200-17882800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:17882200-17882800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:17882200-17882800	Enhancers	Brain Hippocampus Middle	brain
12	chr3:17882200-17883000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:17882400-17882600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr3:17882400-17882800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:17882400-17882800	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:17882400-17882800	Enhancers	Brain Inferior Temporal Lobe	brain

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