Variant report
Variant | rs17044097 |
---|---|
Chromosome Location | chr3:17889751-17889752 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:17888547..17890733-chr3:17892478..17895359,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10510481 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11128860 | 0.89[EUR][1000 genomes] |
rs11128861 | 0.89[EUR][1000 genomes] |
rs11128862 | 0.89[EUR][1000 genomes] |
rs11128863 | 0.89[EUR][1000 genomes] |
rs11128864 | 0.89[EUR][1000 genomes] |
rs11128867 | 0.89[EUR][1000 genomes] |
rs11128868 | 0.89[EUR][1000 genomes] |
rs11128869 | 0.94[EUR][1000 genomes] |
rs11128870 | 0.89[EUR][1000 genomes] |
rs1121174 | 0.94[EUR][1000 genomes] |
rs1121175 | 0.94[EUR][1000 genomes] |
rs11916141 | 0.89[EUR][1000 genomes] |
rs11925066 | 0.89[EUR][1000 genomes] |
rs11925145 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
rs11927436 | 1.00[MEX][hapmap];0.89[EUR][1000 genomes] |
rs11927611 | 0.89[EUR][1000 genomes] |
rs12107652 | 0.89[EUR][1000 genomes] |
rs1430897 | 1.00[EUR][1000 genomes] |
rs1430898 | 1.00[EUR][1000 genomes] |
rs17044038 | 0.89[EUR][1000 genomes] |
rs17044041 | 0.89[EUR][1000 genomes] |
rs17044050 | 0.89[EUR][1000 genomes] |
rs17044053 | 1.00[MEX][hapmap];0.89[EUR][1000 genomes] |
rs17044054 | 0.89[EUR][1000 genomes] |
rs17044072 | 0.95[EUR][1000 genomes] |
rs17044102 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17200923 | 0.94[EUR][1000 genomes] |
rs17200930 | 0.94[EUR][1000 genomes] |
rs17200937 | 0.94[EUR][1000 genomes] |
rs17200944 | 0.94[EUR][1000 genomes] |
rs17273076 | 1.00[TSI][hapmap] |
rs17273083 | 0.94[EUR][1000 genomes] |
rs17273090 | 0.94[EUR][1000 genomes] |
rs17273097 | 0.94[EUR][1000 genomes] |
rs17273139 | 1.00[EUR][1000 genomes] |
rs56726310 | 0.89[EUR][1000 genomes] |
rs56777792 | 0.89[EUR][1000 genomes] |
rs58042633 | 0.89[EUR][1000 genomes] |
rs58280814 | 0.89[EUR][1000 genomes] |
rs60744506 | 0.89[EUR][1000 genomes] |
rs61601581 | 0.89[EUR][1000 genomes] |
rs6772619 | 0.89[EUR][1000 genomes] |
rs6780341 | 0.89[EUR][1000 genomes] |
rs6785982 | 0.89[EUR][1000 genomes] |
rs6793958 | 0.89[EUR][1000 genomes] |
rs6794148 | 0.89[EUR][1000 genomes] |
rs73168749 | 0.89[EUR][1000 genomes] |
rs73168750 | 0.89[EUR][1000 genomes] |
rs73168756 | 0.89[EUR][1000 genomes] |
rs73168763 | 0.89[EUR][1000 genomes] |
rs73168777 | 0.89[EUR][1000 genomes] |
rs930147 | 1.00[EUR][1000 genomes] |
rs992521 | 0.94[EUR][1000 genomes] |
rs992522 | 0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:17888000-17891800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr3:17888400-17892200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr3:17888600-17892000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
4 | chr3:17889400-17890400 | Enhancers | Stomach Smooth Muscle | stomach |
5 | chr3:17889600-17890400 | Enhancers | Fetal Stomach | stomach |