Variant report

Variant	rs17200930
Chromosome Location	chr3:17848865-17848866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10510481	0.94[EUR][1000 genomes]
rs11128860	0.94[EUR][1000 genomes]
rs11128861	0.94[EUR][1000 genomes]
rs11128862	0.94[EUR][1000 genomes]
rs11128863	0.94[EUR][1000 genomes]
rs11128864	0.94[EUR][1000 genomes]
rs11128867	0.94[EUR][1000 genomes]
rs11128868	0.94[EUR][1000 genomes]
rs11128869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128870	0.94[EUR][1000 genomes]
rs1121174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914537	1.00[CEU][hapmap]
rs11915560	1.00[CEU][hapmap]
rs11916141	0.94[EUR][1000 genomes]
rs11923635	1.00[CEU][hapmap]
rs11925034	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11925066	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11925145	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927436	1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[EUR][1000 genomes]
rs11927611	0.94[EUR][1000 genomes]
rs12106899	1.00[CEU][hapmap]
rs12106900	1.00[CEU][hapmap]
rs12107652	0.94[EUR][1000 genomes]
rs12152443	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs1430897	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1430898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17043883	1.00[LWK][hapmap]
rs17044038	0.94[EUR][1000 genomes]
rs17044041	0.94[EUR][1000 genomes]
rs17044050	0.94[EUR][1000 genomes]
rs17044053	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17044054	0.94[EUR][1000 genomes]
rs17044072	0.89[EUR][1000 genomes]
rs17044097	0.94[EUR][1000 genomes]
rs17044102	0.94[EUR][1000 genomes]
rs17200874	1.00[AMR][1000 genomes]
rs17200881	1.00[AMR][1000 genomes]
rs17200923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273076	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs17273083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273139	0.94[EUR][1000 genomes]
rs56726310	0.94[EUR][1000 genomes]
rs56777792	0.94[EUR][1000 genomes]
rs58042633	0.94[EUR][1000 genomes]
rs58280814	0.94[EUR][1000 genomes]
rs60744506	0.94[EUR][1000 genomes]
rs61601581	0.94[EUR][1000 genomes]
rs6772619	0.94[EUR][1000 genomes]
rs6780341	0.94[EUR][1000 genomes]
rs6785982	0.94[EUR][1000 genomes]
rs6786472	1.00[ASN][1000 genomes]
rs6793958	0.94[EUR][1000 genomes]
rs6794148	0.94[EUR][1000 genomes]
rs73168749	0.94[EUR][1000 genomes]
rs73168750	0.94[EUR][1000 genomes]
rs73168756	0.94[EUR][1000 genomes]
rs73168763	0.94[EUR][1000 genomes]
rs73168777	0.94[EUR][1000 genomes]
rs930147	0.94[EUR][1000 genomes]
rs9849948	1.00[AMR][1000 genomes]
rs992521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:17848400-17851000	Weak transcription	Placenta	Placenta

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