Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11128869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1121174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1121175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11925145	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1430897	1.00[AMR][1000 genomes]
rs1430898	1.00[AMR][1000 genomes]
rs17200874	1.00[AMR][1000 genomes]
rs17200881	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17200923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17200930	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17200937	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17200944	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17273076	0.83[EUR][1000 genomes]
rs17273083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17273090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17273097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28456004	0.94[EUR][1000 genomes]
rs57816103	0.94[EUR][1000 genomes]
rs6786472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs992521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs992522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17825800-17828400	Weak transcription	Dnd41	blood
2	chr3:17828000-17828400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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