Variant report

Variant	rs6786472
Chromosome Location	chr3:17827123-17827124
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11128860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128863	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128864	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128865	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11128867	1.00[AMR][1000 genomes]
rs11128868	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11128870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1121174	1.00[ASN][1000 genomes]
rs1121175	1.00[ASN][1000 genomes]
rs11914537	0.84[EUR][1000 genomes]
rs11914797	0.84[EUR][1000 genomes]
rs11915560	0.84[EUR][1000 genomes]
rs11916141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11916424	0.82[AFR][1000 genomes]
rs11921699	0.84[EUR][1000 genomes]
rs11923589	0.84[EUR][1000 genomes]
rs11923635	0.84[EUR][1000 genomes]
rs11924147	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11925066	1.00[AMR][1000 genomes]
rs11925145	1.00[ASN][1000 genomes]
rs11925226	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11926087	0.86[AFR][1000 genomes]
rs11927436	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927611	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927769	0.83[AFR][1000 genomes]
rs11929046	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12106899	0.84[EUR][1000 genomes]
rs12106900	0.84[EUR][1000 genomes]
rs12107061	0.85[AMR][1000 genomes]
rs12107652	1.00[AMR][1000 genomes]
rs12152443	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152509	0.84[EUR][1000 genomes]
rs12185952	0.84[EUR][1000 genomes]
rs17044038	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044041	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044054	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17200923	1.00[ASN][1000 genomes]
rs17200930	1.00[ASN][1000 genomes]
rs17200937	1.00[ASN][1000 genomes]
rs17200944	1.00[ASN][1000 genomes]
rs17273083	1.00[ASN][1000 genomes]
rs17273090	1.00[ASN][1000 genomes]
rs17273097	1.00[ASN][1000 genomes]
rs28456004	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56726310	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56777792	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57816103	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58042633	1.00[AMR][1000 genomes]
rs58280814	1.00[AMR][1000 genomes]
rs58921548	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60245392	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60744506	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60838916	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60940413	0.84[EUR][1000 genomes]
rs61601581	1.00[AMR][1000 genomes]
rs61650046	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6577595	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6763348	0.85[AMR][1000 genomes]
rs6772619	1.00[AMR][1000 genomes]
rs6777064	0.85[AMR][1000 genomes]
rs6780341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6785982	1.00[AMR][1000 genomes]
rs6793958	1.00[AMR][1000 genomes]
rs6794148	1.00[AMR][1000 genomes]
rs73160943	0.84[EUR][1000 genomes]
rs73160950	0.84[EUR][1000 genomes]
rs73160951	0.84[EUR][1000 genomes]
rs73160967	0.84[EUR][1000 genomes]
rs73165725	0.84[EUR][1000 genomes]
rs73165729	0.84[EUR][1000 genomes]
rs73165734	0.84[EUR][1000 genomes]
rs73165735	0.84[EUR][1000 genomes]
rs73165764	0.84[EUR][1000 genomes]
rs73165792	0.84[EUR][1000 genomes]
rs73168749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73168750	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73168752	0.85[AMR][1000 genomes]
rs73168756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73168763	1.00[AMR][1000 genomes]
rs73168777	1.00[AMR][1000 genomes]
rs73172909	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73172914	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73172924	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7619879	0.84[EUR][1000 genomes]
rs9849948	0.94[EUR][1000 genomes]
rs9851302	0.84[EUR][1000 genomes]
rs992521	1.00[ASN][1000 genomes]
rs992522	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17825800-17828400	Weak transcription	Dnd41	blood

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