Variant report

Variant	rs60245392
Chromosome Location	chr3:17803959-17803960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17782372..17784462-chr3:17803222..17806445,3	MCF-7	breast:
2	chr3:17802819..17806567-chr3:17807194..17809749,3	K562	blood:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11128860	0.85[AMR][1000 genomes]
rs11128861	0.85[AMR][1000 genomes]
rs11128862	0.85[AMR][1000 genomes]
rs11128863	0.85[AMR][1000 genomes]
rs11128864	0.85[AMR][1000 genomes]
rs11128867	0.85[AMR][1000 genomes]
rs11128868	0.85[AMR][1000 genomes]
rs11128870	0.85[AMR][1000 genomes]
rs11916141	0.85[AMR][1000 genomes]
rs11916424	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11922861	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11924147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924560	1.00[EUR][1000 genomes]
rs11925066	0.85[AMR][1000 genomes]
rs11925226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925353	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11926072	1.00[EUR][1000 genomes]
rs11926087	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926251	1.00[EUR][1000 genomes]
rs11927283	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11927436	0.85[AMR][1000 genomes]
rs11927611	0.85[AMR][1000 genomes]
rs11927769	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11927967	1.00[EUR][1000 genomes]
rs11929046	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929521	1.00[EUR][1000 genomes]
rs12107061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107652	0.85[AMR][1000 genomes]
rs17044038	0.85[AMR][1000 genomes]
rs17044041	0.85[AMR][1000 genomes]
rs17044050	0.85[AMR][1000 genomes]
rs17044053	0.85[AMR][1000 genomes]
rs17044054	0.85[AMR][1000 genomes]
rs28456004	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28525383	1.00[EUR][1000 genomes]
rs56726310	0.85[AMR][1000 genomes]
rs56777792	0.85[AMR][1000 genomes]
rs57352109	1.00[EUR][1000 genomes]
rs57816103	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58042633	0.85[AMR][1000 genomes]
rs58152540	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58280814	0.85[AMR][1000 genomes]
rs58392667	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58848058	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58921548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59891221	1.00[EUR][1000 genomes]
rs59960076	1.00[EUR][1000 genomes]
rs60459720	1.00[EUR][1000 genomes]
rs60662240	1.00[EUR][1000 genomes]
rs60744506	0.85[AMR][1000 genomes]
rs60803166	1.00[EUR][1000 genomes]
rs60838916	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61601581	0.85[AMR][1000 genomes]
rs61650046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61698855	1.00[EUR][1000 genomes]
rs6577595	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6577629	1.00[EUR][1000 genomes]
rs6763348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772619	0.85[AMR][1000 genomes]
rs6777064	1.00[AMR][1000 genomes]
rs6780341	0.85[AMR][1000 genomes]
rs6785982	0.85[AMR][1000 genomes]
rs6786472	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6793958	0.85[AMR][1000 genomes]
rs6794148	0.85[AMR][1000 genomes]
rs6796915	1.00[EUR][1000 genomes]
rs73160959	1.00[EUR][1000 genomes]
rs73160964	1.00[EUR][1000 genomes]
rs73164768	1.00[EUR][1000 genomes]
rs73164787	1.00[EUR][1000 genomes]
rs73164796	1.00[EUR][1000 genomes]
rs73165722	1.00[EUR][1000 genomes]
rs73165736	1.00[EUR][1000 genomes]
rs73165740	1.00[EUR][1000 genomes]
rs73165743	1.00[EUR][1000 genomes]
rs73165752	1.00[EUR][1000 genomes]
rs73165771	1.00[EUR][1000 genomes]
rs73165774	1.00[EUR][1000 genomes]
rs73165775	1.00[EUR][1000 genomes]
rs73165777	1.00[EUR][1000 genomes]
rs73165779	1.00[EUR][1000 genomes]
rs73165798	1.00[EUR][1000 genomes]
rs73166516	1.00[EUR][1000 genomes]
rs73166544	1.00[EUR][1000 genomes]
rs73167510	1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	1.00[EUR][1000 genomes]
rs73167523	1.00[EUR][1000 genomes]
rs73167527	1.00[EUR][1000 genomes]
rs73168748	1.00[EUR][1000 genomes]
rs73168749	0.85[AMR][1000 genomes]
rs73168752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73168756	0.85[AMR][1000 genomes]
rs73168763	0.85[AMR][1000 genomes]
rs73168777	0.85[AMR][1000 genomes]
rs73170844	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170845	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170855	1.00[EUR][1000 genomes]
rs73170858	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170877	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170878	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73172909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73172914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73172924	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620585	1.00[EUR][1000 genomes]
rs7630381	1.00[EUR][1000 genomes]
rs7631803	1.00[EUR][1000 genomes]
rs7648122	1.00[EUR][1000 genomes]
rs9680896	1.00[EUR][1000 genomes]
rs9754654	1.00[EUR][1000 genomes]
rs9754657	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9941993	1.00[EUR][1000 genomes]
rs9968236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17801800-17804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:17802000-17804600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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