Variant report

Variant	rs60662240
Chromosome Location	chr3:17845230-17845231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17843575..17846389-chr3:17850331..17852349,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11916424	1.00[EUR][1000 genomes]
rs11922861	1.00[EUR][1000 genomes]
rs11924147	1.00[EUR][1000 genomes]
rs11924560	1.00[EUR][1000 genomes]
rs11925226	1.00[EUR][1000 genomes]
rs11925353	1.00[EUR][1000 genomes]
rs11926072	1.00[EUR][1000 genomes]
rs11926087	1.00[EUR][1000 genomes]
rs11926251	1.00[EUR][1000 genomes]
rs11927283	1.00[EUR][1000 genomes]
rs11927769	1.00[EUR][1000 genomes]
rs11927967	1.00[EUR][1000 genomes]
rs11929046	1.00[EUR][1000 genomes]
rs11929521	1.00[EUR][1000 genomes]
rs12107061	1.00[EUR][1000 genomes]
rs28525383	1.00[EUR][1000 genomes]
rs57352109	1.00[EUR][1000 genomes]
rs58152540	1.00[EUR][1000 genomes]
rs58392667	1.00[EUR][1000 genomes]
rs58848058	1.00[EUR][1000 genomes]
rs58921548	1.00[EUR][1000 genomes]
rs60245392	1.00[EUR][1000 genomes]
rs60459720	1.00[EUR][1000 genomes]
rs60803166	1.00[EUR][1000 genomes]
rs60838916	1.00[EUR][1000 genomes]
rs61650046	1.00[EUR][1000 genomes]
rs6577595	1.00[EUR][1000 genomes]
rs6577629	1.00[EUR][1000 genomes]
rs6763348	1.00[EUR][1000 genomes]
rs6796915	1.00[EUR][1000 genomes]
rs73164768	1.00[EUR][1000 genomes]
rs73164787	1.00[EUR][1000 genomes]
rs73164796	1.00[EUR][1000 genomes]
rs73165722	1.00[EUR][1000 genomes]
rs73165736	1.00[EUR][1000 genomes]
rs73165740	1.00[EUR][1000 genomes]
rs73165743	1.00[EUR][1000 genomes]
rs73165752	1.00[EUR][1000 genomes]
rs73165771	1.00[EUR][1000 genomes]
rs73165774	1.00[EUR][1000 genomes]
rs73165775	1.00[EUR][1000 genomes]
rs73165777	1.00[EUR][1000 genomes]
rs73165779	1.00[EUR][1000 genomes]
rs73165798	1.00[EUR][1000 genomes]
rs73166516	1.00[EUR][1000 genomes]
rs73166544	1.00[EUR][1000 genomes]
rs73167510	1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	1.00[EUR][1000 genomes]
rs73167523	1.00[EUR][1000 genomes]
rs73167527	1.00[EUR][1000 genomes]
rs73168748	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73168752	1.00[EUR][1000 genomes]
rs73168767	0.92[AFR][1000 genomes]
rs73170844	1.00[EUR][1000 genomes]
rs73170845	1.00[EUR][1000 genomes]
rs73170855	1.00[EUR][1000 genomes]
rs73170858	1.00[EUR][1000 genomes]
rs73170877	1.00[EUR][1000 genomes]
rs73170878	1.00[EUR][1000 genomes]
rs73172909	1.00[EUR][1000 genomes]
rs73172914	1.00[EUR][1000 genomes]
rs73172924	1.00[EUR][1000 genomes]
rs7620585	1.00[EUR][1000 genomes]
rs7630381	1.00[EUR][1000 genomes]
rs7631803	1.00[EUR][1000 genomes]
rs7648122	1.00[EUR][1000 genomes]
rs9754654	1.00[EUR][1000 genomes]
rs9754657	1.00[EUR][1000 genomes]
rs9968236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17835200-17847400	Weak transcription	Dnd41	blood
2	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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