Variant report

Variant	rs6796915
Chromosome Location	chr3:17769930-17769931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17769377..17773406-chr3:17782052..17786332,6	MCF-7	breast:
2	chr3:17750104..17752042-chr3:17769310..17770885,2	K562	blood:
3	chr3:17753447..17755867-chr3:17768975..17771432,2	K562	blood:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11916424	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11922861	1.00[EUR][1000 genomes]
rs11924147	1.00[EUR][1000 genomes]
rs11924560	1.00[EUR][1000 genomes]
rs11925226	1.00[EUR][1000 genomes]
rs11925353	1.00[EUR][1000 genomes]
rs11926072	1.00[EUR][1000 genomes]
rs11926087	1.00[EUR][1000 genomes]
rs11926251	1.00[EUR][1000 genomes]
rs11927232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927283	1.00[EUR][1000 genomes]
rs11927769	1.00[EUR][1000 genomes]
rs11927967	1.00[EUR][1000 genomes]
rs11929046	1.00[EUR][1000 genomes]
rs11929521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107061	1.00[EUR][1000 genomes]
rs28525383	1.00[EUR][1000 genomes]
rs57352109	1.00[EUR][1000 genomes]
rs58152540	1.00[EUR][1000 genomes]
rs58392667	1.00[EUR][1000 genomes]
rs58848058	1.00[EUR][1000 genomes]
rs58921548	1.00[EUR][1000 genomes]
rs59891221	1.00[EUR][1000 genomes]
rs59960076	1.00[EUR][1000 genomes]
rs60245392	1.00[EUR][1000 genomes]
rs60413863	1.00[AMR][1000 genomes]
rs60459720	1.00[EUR][1000 genomes]
rs60662240	1.00[EUR][1000 genomes]
rs60803166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60838916	1.00[EUR][1000 genomes]
rs61650046	1.00[EUR][1000 genomes]
rs61698855	1.00[EUR][1000 genomes]
rs6577595	1.00[EUR][1000 genomes]
rs6577629	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6763348	1.00[EUR][1000 genomes]
rs73160959	1.00[EUR][1000 genomes]
rs73160964	1.00[EUR][1000 genomes]
rs73164768	1.00[EUR][1000 genomes]
rs73164787	1.00[EUR][1000 genomes]
rs73164796	1.00[EUR][1000 genomes]
rs73165722	1.00[EUR][1000 genomes]
rs73165736	1.00[EUR][1000 genomes]
rs73165740	1.00[EUR][1000 genomes]
rs73165743	1.00[EUR][1000 genomes]
rs73165752	1.00[EUR][1000 genomes]
rs73165771	1.00[EUR][1000 genomes]
rs73165774	1.00[EUR][1000 genomes]
rs73165775	1.00[EUR][1000 genomes]
rs73165777	1.00[EUR][1000 genomes]
rs73165779	1.00[EUR][1000 genomes]
rs73165798	1.00[EUR][1000 genomes]
rs73166516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73166544	1.00[EUR][1000 genomes]
rs73167510	1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	1.00[EUR][1000 genomes]
rs73167523	1.00[EUR][1000 genomes]
rs73167527	1.00[EUR][1000 genomes]
rs73168748	1.00[EUR][1000 genomes]
rs73168752	1.00[EUR][1000 genomes]
rs73170844	1.00[EUR][1000 genomes]
rs73170845	1.00[EUR][1000 genomes]
rs73170855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73170858	1.00[EUR][1000 genomes]
rs73170877	1.00[EUR][1000 genomes]
rs73170878	1.00[EUR][1000 genomes]
rs73172909	1.00[EUR][1000 genomes]
rs73172914	1.00[EUR][1000 genomes]
rs73172924	1.00[EUR][1000 genomes]
rs7620585	1.00[EUR][1000 genomes]
rs7630381	1.00[EUR][1000 genomes]
rs7631803	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648122	1.00[EUR][1000 genomes]
rs9680896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9683129	1.00[AMR][1000 genomes]
rs9754654	1.00[EUR][1000 genomes]
rs9754657	1.00[EUR][1000 genomes]
rs9941993	1.00[EUR][1000 genomes]
rs9968236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17755200-17771800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:17755400-17781600	Weak transcription	Pancreas	Pancrea
3	chr3:17756200-17774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:17756200-17782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:17756400-17780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:17756400-17782800	Weak transcription	Aorta	Aorta
7	chr3:17756600-17771800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:17756600-17782200	Weak transcription	HSMM	muscle
9	chr3:17756800-17781600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:17756800-17782200	Weak transcription	NHLF	lung
11	chr3:17757000-17780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:17757200-17771600	Weak transcription	HUVEC	blood vessel
13	chr3:17757200-17774400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:17757200-17780400	Weak transcription	Adipose Nuclei	Adipose
15	chr3:17757200-17780800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:17757200-17782200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:17757400-17770600	Weak transcription	Placenta	Placenta
18	chr3:17757400-17771800	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:17757400-17780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:17757400-17780600	Weak transcription	Small Intestine	intestine
21	chr3:17757400-17781600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:17757400-17782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:17757600-17780600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:17757600-17781000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:17757600-17781600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:17757600-17782200	Weak transcription	Spleen	Spleen
27	chr3:17757600-17782400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:17757600-17783200	Weak transcription	Ovary	ovary
29	chr3:17757800-17780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:17758000-17773000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:17759200-17782200	Weak transcription	HSMMtube	muscle
32	chr3:17759600-17780000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:17759800-17772000	Weak transcription	Fetal Heart	heart
34	chr3:17759800-17778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:17759800-17781600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:17761800-17771800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr3:17762200-17783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:17762600-17782400	Weak transcription	Psoas Muscle	Psoas
39	chr3:17764200-17780200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:17764800-17782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:17765000-17777200	Weak transcription	Lung	lung
42	chr3:17765000-17782200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:17765800-17781600	Weak transcription	HepG2	liver
44	chr3:17765800-17783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:17766200-17770000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:17766400-17782200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:17766600-17770000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:17766800-17770200	ZNF genes & repeats	GM12878-XiMat	blood
49	chr3:17766800-17772200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr3:17767000-17770200	Strong transcription	A549	lung

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