Variant report

Variant	rs11924560
Chromosome Location	chr3:17720804-17720805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17709687..17712550-chr3:17720068..17722568,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11916424	1.00[EUR][1000 genomes]
rs11916984	1.00[EUR][1000 genomes]
rs11922861	1.00[EUR][1000 genomes]
rs11924147	1.00[EUR][1000 genomes]
rs11925226	1.00[EUR][1000 genomes]
rs11925353	1.00[EUR][1000 genomes]
rs11926072	1.00[EUR][1000 genomes]
rs11926087	1.00[EUR][1000 genomes]
rs11926251	1.00[EUR][1000 genomes]
rs11927232	1.00[EUR][1000 genomes]
rs11927283	1.00[EUR][1000 genomes]
rs11927769	1.00[EUR][1000 genomes]
rs11927967	1.00[EUR][1000 genomes]
rs11929046	1.00[EUR][1000 genomes]
rs11929521	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12107061	1.00[EUR][1000 genomes]
rs28525383	1.00[EUR][1000 genomes]
rs57352109	1.00[EUR][1000 genomes]
rs58152540	1.00[EUR][1000 genomes]
rs58392667	1.00[EUR][1000 genomes]
rs58848058	1.00[EUR][1000 genomes]
rs58921548	1.00[EUR][1000 genomes]
rs59891221	1.00[EUR][1000 genomes]
rs59960076	1.00[EUR][1000 genomes]
rs60245392	1.00[EUR][1000 genomes]
rs60459720	1.00[EUR][1000 genomes]
rs60662240	1.00[EUR][1000 genomes]
rs60803166	1.00[EUR][1000 genomes]
rs60838916	1.00[EUR][1000 genomes]
rs61650046	1.00[EUR][1000 genomes]
rs61698855	1.00[EUR][1000 genomes]
rs6577595	1.00[EUR][1000 genomes]
rs6577629	1.00[EUR][1000 genomes]
rs6763348	1.00[EUR][1000 genomes]
rs6796915	1.00[EUR][1000 genomes]
rs73160959	1.00[EUR][1000 genomes]
rs73160964	1.00[EUR][1000 genomes]
rs73164768	1.00[EUR][1000 genomes]
rs73164787	1.00[EUR][1000 genomes]
rs73164796	1.00[EUR][1000 genomes]
rs73165722	1.00[EUR][1000 genomes]
rs73165736	1.00[EUR][1000 genomes]
rs73165740	1.00[EUR][1000 genomes]
rs73165743	1.00[EUR][1000 genomes]
rs73165752	1.00[EUR][1000 genomes]
rs73165771	1.00[EUR][1000 genomes]
rs73165774	1.00[EUR][1000 genomes]
rs73165775	1.00[EUR][1000 genomes]
rs73165777	1.00[EUR][1000 genomes]
rs73165779	1.00[EUR][1000 genomes]
rs73165798	1.00[EUR][1000 genomes]
rs73166516	1.00[EUR][1000 genomes]
rs73166544	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73167510	1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	1.00[EUR][1000 genomes]
rs73167523	1.00[EUR][1000 genomes]
rs73167527	1.00[EUR][1000 genomes]
rs73168748	1.00[EUR][1000 genomes]
rs73168752	1.00[EUR][1000 genomes]
rs73170844	1.00[EUR][1000 genomes]
rs73170845	1.00[EUR][1000 genomes]
rs73170855	1.00[EUR][1000 genomes]
rs73170858	1.00[EUR][1000 genomes]
rs73170877	1.00[EUR][1000 genomes]
rs73170878	1.00[EUR][1000 genomes]
rs73172909	1.00[EUR][1000 genomes]
rs73172914	1.00[EUR][1000 genomes]
rs73172924	1.00[EUR][1000 genomes]
rs7620585	1.00[EUR][1000 genomes]
rs7621577	1.00[EUR][1000 genomes]
rs7630381	1.00[EUR][1000 genomes]
rs7631803	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs7648122	1.00[EUR][1000 genomes]
rs9680896	1.00[EUR][1000 genomes]
rs9754654	1.00[EUR][1000 genomes]
rs9754657	1.00[EUR][1000 genomes]
rs9941993	1.00[EUR][1000 genomes]
rs9968236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3528586	chr3:17719048-17726146	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3528589	chr3:17719498-17725996	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv963551	chr3:17719686-17724345	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3461527	chr3:17719922-17725113	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3528588	chr3:17719963-17725110	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3528587	chr3:17719970-17725106	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3461526	chr3:17719974-17725110	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3528590	chr3:17720002-17725075	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3528591	chr3:17720002-17725075	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv12509	chr3:17720059-17725015	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3461528	chr3:17720063-17725030	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17694400-17721800	Weak transcription	A549	lung
2	chr3:17707000-17734800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:17709200-17723200	Weak transcription	Aorta	Aorta
4	chr3:17709200-17732000	Weak transcription	Psoas Muscle	Psoas
5	chr3:17709600-17725800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:17712600-17732600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:17713400-17723200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:17714400-17725200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:17714600-17724800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:17719800-17723400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:17720000-17722200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:17720000-17727600	Weak transcription	Brain Substantia Nigra	brain
14	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:17720200-17734200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:17720600-17722800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:17720600-17723600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:17720600-17734400	Weak transcription	Dnd41	blood
19	chr3:17720800-17723800	Weak transcription	Osteobl	bone

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