Variant report

Variant	rs11926072
Chromosome Location	chr3:17734329-17734330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17725117..17727704-chr3:17732645..17734795,3	MCF-7	breast:
2	chr3:17732579..17734516-chr3:17782367..17784084,2	MCF-7	breast:
3	chr3:17729826..17731656-chr3:17733369..17736169,3	MCF-7	breast:
4	chr3:17729939..17731943-chr3:17732995..17734878,2	MCF-7	breast:
5	chr3:17721696..17724606-chr3:17732689..17735501,2	K562	blood:
6	chr3:17472331..17474427-chr3:17733760..17736029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11914537	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11914797	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11915560	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11916424	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921699	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11922861	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923635	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11924147	1.00[EUR][1000 genomes]
rs11924560	1.00[EUR][1000 genomes]
rs11925226	1.00[EUR][1000 genomes]
rs11925353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926087	1.00[EUR][1000 genomes]
rs11926251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927232	1.00[EUR][1000 genomes]
rs11927283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927769	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929046	1.00[EUR][1000 genomes]
rs11929521	1.00[EUR][1000 genomes]
rs12106899	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12106900	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12107061	1.00[EUR][1000 genomes]
rs12152509	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12185952	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28525383	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57352109	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58152540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58392667	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58848058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58921548	1.00[EUR][1000 genomes]
rs59582994	0.87[AMR][1000 genomes]
rs59891221	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59960076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60245392	1.00[EUR][1000 genomes]
rs60459720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662240	1.00[EUR][1000 genomes]
rs60803166	1.00[EUR][1000 genomes]
rs60838916	1.00[EUR][1000 genomes]
rs60940413	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61650046	1.00[EUR][1000 genomes]
rs61698855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6577595	1.00[EUR][1000 genomes]
rs6577629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763348	1.00[EUR][1000 genomes]
rs6796915	1.00[EUR][1000 genomes]
rs73160940	0.87[AMR][1000 genomes]
rs73160942	0.87[AMR][1000 genomes]
rs73160943	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160950	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160951	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160957	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160964	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160967	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73164768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164796	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165729	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165734	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165735	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165736	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165740	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165743	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165752	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165764	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165771	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165774	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165775	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165777	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165779	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73165792	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165798	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73166516	1.00[EUR][1000 genomes]
rs73166544	1.00[EUR][1000 genomes]
rs73167503	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167527	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73168748	1.00[EUR][1000 genomes]
rs73168752	1.00[EUR][1000 genomes]
rs73170844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73170845	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170855	1.00[EUR][1000 genomes]
rs73170858	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73170877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73170878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73172909	1.00[EUR][1000 genomes]
rs73172914	1.00[EUR][1000 genomes]
rs73172924	1.00[EUR][1000 genomes]
rs7619879	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7620585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621577	1.00[EUR][1000 genomes]
rs7630381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631803	1.00[EUR][1000 genomes]
rs7648122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9680896	1.00[EUR][1000 genomes]
rs9754654	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9754657	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9941993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968236	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17707000-17734800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:17720600-17734400	Weak transcription	Dnd41	blood
5	chr3:17723400-17735200	Weak transcription	Gastric	stomach
6	chr3:17723600-17734400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:17723600-17736000	Weak transcription	Pancreas	Pancrea
8	chr3:17723600-17736800	Weak transcription	Ovary	ovary
9	chr3:17724600-17734800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:17725800-17734400	Weak transcription	A549	lung
11	chr3:17726800-17742200	Weak transcription	Stomach Mucosa	stomach
12	chr3:17730400-17734400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:17730400-17734600	Weak transcription	Spleen	Spleen
14	chr3:17731600-17755600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:17731800-17734400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:17732200-17749400	Weak transcription	NHEK	skin
17	chr3:17732600-17735200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:17732600-17755400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:17732800-17734400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:17732800-17734400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17733200-17755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:17733400-17734800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:17733400-17736400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:17733400-17747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:17733600-17734800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:17733600-17736000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:17733800-17736200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:17734200-17734400	Enhancers	K562	blood
29	chr3:17734200-17735200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:17734200-17735400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr3:17734200-17736000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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