Variant report

Variant	rs12106900
Chromosome Location	chr3:17667882-17667883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:17667785-17668309	HL-60	blood:	n/a	chr3:17668042-17668055 chr3:17668041-17668054 chr3:17668044-17668053

No.	Distal block	Cell Line	Cell type
1	chr3:17661913..17664495-chr3:17666006..17668523,2	MCF-7	breast:
2	chr3:17659334..17661547-chr3:17665428..17668300,2	MCF-7	breast:
3	chr3:17667671..17669916-chr3:17678475..17680012,2	MCF-7	breast:
4	chr3:17662482..17664001-chr3:17666148..17668577,2	K562	blood:

Variant related genes	Relation type
TBC1D5	TF binding region

Extended variants
information (count: 322 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:315)

rs_ID	r²[population]
rs11128829	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128836	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11128838	0.85[CHB][hapmap]
rs11128849	0.85[CHB][hapmap]
rs11128850	0.85[CHB][hapmap]
rs11914537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915019	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918387	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921699	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922177	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922861	0.87[AMR][1000 genomes]
rs11923589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11925353	0.87[AMR][1000 genomes]
rs11925427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926072	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11926251	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11927283	0.87[AMR][1000 genomes]
rs11927436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11927654	0.85[CHB][hapmap]
rs11927769	0.87[AMR][1000 genomes]
rs11927967	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11928397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929394	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108135	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152509	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374023	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13076724	0.85[CHB][hapmap]
rs13320647	0.85[CHB][hapmap]
rs1374199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446302	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446303	0.84[CHB][hapmap]
rs1596863	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17043556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043585	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043589	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043618	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17044072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17200881	0.95[EUR][1000 genomes]
rs17273048	0.95[EUR][1000 genomes]
rs17273076	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1823099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033378	0.85[CHB][hapmap]
rs2121262	0.85[CHB][hapmap]
rs28456004	0.84[EUR][1000 genomes]
rs28525383	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2881803	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34073532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35302807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935701	0.86[EUR][1000 genomes]
rs4260468	0.85[CHB][hapmap]
rs4377510	0.85[CHB][hapmap]
rs4611850	0.85[CHB][hapmap]
rs4627740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637311	1.00[JPT][hapmap]
rs4908965	0.85[CHB][hapmap]
rs4908967	0.85[CHB][hapmap]
rs56746012	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56757867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56824662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56950773	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57087795	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57153645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57161733	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57201363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344515	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352109	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57427954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57816103	0.84[EUR][1000 genomes]
rs57825001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58003185	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58066441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152540	0.87[AMR][1000 genomes]
rs58233162	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58392667	0.87[AMR][1000 genomes]
rs58473554	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58475382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58595628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58617436	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58653570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58790051	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848058	0.87[AMR][1000 genomes]
rs58856794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59394144	1.00[EUR][1000 genomes]
rs59460836	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59582994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59891221	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59960076	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60019424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60140283	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60158152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60459720	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60580179	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60909298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940413	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60964146	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60993983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61057228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61626295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61698855	0.84[AFR][1000 genomes]
rs6577629	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6766514	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767839	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778109	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780076	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786472	0.84[EUR][1000 genomes]
rs6788957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804323	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807020	0.85[CHB][hapmap]
rs6809000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153017	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153050	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153055	1.00[ASN][1000 genomes]
rs73153057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153061	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153063	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153069	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153071	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153072	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153073	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153074	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153075	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153079	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153086	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153089	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153093	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155205	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155206	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155208	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155211	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155226	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156395	1.00[EUR][1000 genomes]
rs73156397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73158011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160923	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160929	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160943	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73160950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160957	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160959	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160964	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73160967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161403	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161425	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164768	0.87[AMR][1000 genomes]
rs73164787	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73164796	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165722	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165735	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165736	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165740	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165743	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165752	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165771	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165774	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165775	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165777	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165779	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73165792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165798	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167503	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167510	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167514	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167523	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73167527	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73170844	0.87[AMR][1000 genomes]
rs73170845	0.87[AMR][1000 genomes]
rs73170858	0.87[AMR][1000 genomes]
rs73170877	0.87[AMR][1000 genomes]
rs73170878	0.87[AMR][1000 genomes]
rs7427235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427885	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427909	0.95[EUR][1000 genomes]
rs7427937	0.95[EUR][1000 genomes]
rs7432241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7612938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620585	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7625855	0.85[CHB][hapmap]
rs7627732	0.85[CHB][hapmap]
rs7628126	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630381	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7634642	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648122	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7650295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651998	0.85[CHB][hapmap]
rs8179891	0.85[CHB][hapmap]
rs9310519	0.85[CHB][hapmap]
rs9310520	0.85[CHB][hapmap]
rs9310526	0.85[CHB][hapmap]
rs9310528	0.85[CHB][hapmap]
rs9681628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9713431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754654	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9754657	0.87[AMR][1000 genomes]
rs9757339	0.85[CHB][hapmap]
rs9821318	0.85[CHB][hapmap]
rs9823064	0.85[CHB][hapmap]
rs9823767	0.85[CHB][hapmap]
rs9839588	0.82[CHB][hapmap]
rs9847477	0.82[CHB][hapmap]
rs9851302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864494	0.85[CHB][hapmap]
rs9876715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878954	0.85[CHB][hapmap]
rs9941993	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9968236	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:17639200-17676800	Weak transcription	Ovary	ovary
4	chr3:17647000-17670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:17647400-17673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:17647800-17673000	Weak transcription	Psoas Muscle	Psoas
7	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
8	chr3:17651400-17673200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:17657600-17673200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:17657800-17668200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:17657800-17681200	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:17658000-17669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:17658200-17668400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:17658400-17668000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:17658800-17677200	Weak transcription	Small Intestine	intestine
17	chr3:17659400-17676800	Weak transcription	Right Atrium	heart
18	chr3:17659800-17672800	Weak transcription	Fetal Heart	heart
19	chr3:17660200-17668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:17660400-17668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:17660400-17668000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:17660400-17668000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:17660400-17668400	Weak transcription	Gastric	stomach
24	chr3:17660400-17669600	Weak transcription	Lung	lung
25	chr3:17660400-17671000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:17660400-17671200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:17660400-17673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:17660400-17673200	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:17660400-17674600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:17660400-17679800	Weak transcription	Adipose Nuclei	Adipose
31	chr3:17660600-17674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:17662000-17671600	Weak transcription	Fetal Intestine Small	intestine
33	chr3:17663600-17668000	Weak transcription	A549	lung
34	chr3:17664000-17668000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:17664000-17668000	Weak transcription	GM12878-XiMat	blood
36	chr3:17664000-17671400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:17664000-17671400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:17664000-17674600	Weak transcription	Left Ventricle	heart
39	chr3:17664000-17679000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:17664600-17668000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr3:17664600-17670000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:17664800-17668000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:17664800-17670200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr3:17664800-17671400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:17665000-17670400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr3:17665200-17668400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:17665200-17671400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:17665200-17672400	Weak transcription	Dnd41	blood

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