Variant report

Variant	rs9864494
Chromosome Location	chr3:17473346-17473347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17468044..17471008-chr3:17472912..17474863,2	MCF-7	breast:
2	chr3:17464487..17468576-chr3:17470106..17473767,3	K562	blood:
3	chr3:17472331..17474427-chr3:17733760..17736029,2	MCF-7	breast:
4	chr3:17472273..17475803-chr3:17482384..17484152,3	K562	blood:
5	chr3:17472510..17474069-chr3:17729758..17732549,2	K562	blood:
6	chr3:17472682..17474282-chr3:17477579..17479223,2	K562	blood:

Extended variants
information (count: 291 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:275)

rs_ID	r²[population]
rs10212255	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10510474	0.85[CHD][hapmap]
rs10510475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10865749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11128829	0.85[CHB][hapmap]
rs11128830	0.85[CHB][hapmap]
rs11128833	0.85[CHB][hapmap]
rs1120412	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11708391	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11713917	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs11717644	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11914797	0.82[CHB][hapmap]
rs11916205	0.85[CHD][hapmap]
rs11918295	0.85[CHB][hapmap]
rs11920557	0.82[CHB][hapmap]
rs11920751	0.85[CHB][hapmap]
rs11921357	0.85[CHD][hapmap]
rs11922177	0.85[CHD][hapmap]
rs11922534	0.85[CHB][hapmap]
rs11924970	0.85[CHB][hapmap]
rs11929394	0.85[CHB][hapmap]
rs12106762	0.85[CHB][hapmap]
rs12106770	0.85[CHB][hapmap]
rs12106899	0.85[CHB][hapmap]
rs12106900	0.85[CHB][hapmap]
rs12185952	0.85[CHB][hapmap]
rs12488093	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs12488687	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493567	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12494513	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13093375	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13095571	0.83[EUR][1000 genomes]
rs13318609	0.88[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs13318886	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13320647	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13320693	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13322641	0.86[EUR][1000 genomes]
rs13327810	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13353435	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1374197	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1375818	0.80[AMR][1000 genomes]
rs1446301	0.82[CHB][hapmap]
rs1446303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1449881	0.88[CEU][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs1449882	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1449885	0.88[EUR][1000 genomes]
rs1449887	0.87[EUR][1000 genomes]
rs1449888	0.87[EUR][1000 genomes]
rs1463218	0.88[CEU][hapmap]
rs1470667	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1596863	0.85[CHB][hapmap]
rs17029249	0.85[CHD][hapmap]
rs17043422	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs17043425	0.85[CHD][hapmap]
rs17043467	0.85[CHD][hapmap]
rs17043486	0.85[CHD][hapmap]
rs17043492	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs17043494	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs17043539	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17043541	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17043556	0.85[CHB][hapmap]
rs17043558	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043565	0.85[CHB][hapmap]
rs17043568	0.85[CHB][hapmap]
rs17043571	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043574	0.85[CHB][hapmap]
rs17043578	0.85[CHB][hapmap]
rs17043579	0.85[CHB][hapmap]
rs17043589	0.85[CHD][hapmap]
rs17043623	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043631	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043643	0.85[CHB][hapmap]
rs17043652	0.85[CHB][hapmap]
rs17200818	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17200839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17273020	0.94[MEX][hapmap]
rs1867772	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs187303	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2028874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2060623	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2060624	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060625	0.88[CEU][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs2060627	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060628	0.88[CEU][hapmap]
rs2060629	0.88[CEU][hapmap]
rs2084572	0.88[CEU][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2121262	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2247106	0.88[CEU][hapmap]
rs2348003	0.88[CEU][hapmap]
rs2348004	0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs2348005	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2348363	0.84[ASN][1000 genomes]
rs2470347	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2470577	0.81[EUR][1000 genomes]
rs2470580	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs2470583	0.91[CEU][hapmap]
rs2592099	0.92[CEU][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs2596636	0.88[CEU][hapmap]
rs2596637	0.88[CEU][hapmap]
rs2596638	0.88[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs2596639	0.86[CEU][hapmap]
rs2596640	0.88[CEU][hapmap]
rs2596641	0.89[EUR][1000 genomes]
rs2596643	0.92[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2596645	0.91[CEU][hapmap]
rs2596646	0.92[CEU][hapmap]
rs2596648	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596649	0.89[EUR][1000 genomes]
rs2596650	0.96[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs2596652	0.86[EUR][1000 genomes]
rs2596662	0.85[EUR][1000 genomes]
rs2596674	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs2596675	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2596677	0.81[EUR][1000 genomes]
rs2596678	0.88[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs2596679	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs2596680	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2596681	0.88[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs2733478	0.81[EUR][1000 genomes]
rs2733479	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs2733481	0.81[EUR][1000 genomes]
rs2733485	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733486	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2733487	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733489	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733491	0.92[CEU][hapmap]
rs2733492	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733495	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2733496	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2733497	0.88[CEU][hapmap]
rs2733498	0.88[CEU][hapmap]
rs2733499	0.88[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs2733500	0.88[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs2733501	0.88[CEU][hapmap]
rs2733502	0.87[CEU][hapmap]
rs2733510	0.80[AMR][1000 genomes]
rs2733514	0.92[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs2733515	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733517	0.88[CEU][hapmap]
rs2733523	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733524	0.81[EUR][1000 genomes]
rs283906	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs283908	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs283909	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs283911	0.82[EUR][1000 genomes]
rs283912	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs283913	0.82[EUR][1000 genomes]
rs283914	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283915	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs283916	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs283917	0.92[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs283918	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs283919	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs283921	0.82[EUR][1000 genomes]
rs283922	0.81[EUR][1000 genomes]
rs283923	0.81[EUR][1000 genomes]
rs283925	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs283927	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs283929	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283930	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283931	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs283934	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs283935	0.88[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs283936	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs283937	0.81[EUR][1000 genomes]
rs283938	0.84[EUR][1000 genomes]
rs283940	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs283941	0.92[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283942	0.92[EUR][1000 genomes]
rs283943	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283944	0.88[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283945	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs283946	0.92[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs283947	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283948	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283949	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs28408438	0.86[EUR][1000 genomes]
rs28454413	0.86[EUR][1000 genomes]
rs2881803	0.85[CHD][hapmap]
rs34502358	0.86[EUR][1000 genomes]
rs34892692	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35126965	0.81[EUR][1000 genomes]
rs35234876	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35521582	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4312642	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4470554	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs4582042	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4615062	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4627740	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs62245914	0.86[EUR][1000 genomes]
rs62245947	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442679	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6442680	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6442681	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6442682	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442683	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6762516	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6763593	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763681	0.88[CEU][hapmap]
rs6772394	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6785870	0.86[EUR][1000 genomes]
rs6787756	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6788763	0.82[CEU][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6788957	0.85[CHB][hapmap]
rs6792443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792589	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6792747	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs6799259	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6801690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803999	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs728022	0.88[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs7427235	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7432241	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7614318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7618836	0.85[CHB][hapmap]
rs7623979	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7625175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7625855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630286	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7630433	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7632989	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7636787	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7642719	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7644020	0.92[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7644389	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7645756	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7647905	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7648883	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7650295	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7651278	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7652792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs767685	0.88[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs9310516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9310519	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs9310520	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9310524	0.95[ASN][1000 genomes]
rs9310526	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9310528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs9756494	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9757339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9810675	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9812199	0.88[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs9812906	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9813532	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9815204	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9817290	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9820703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9821318	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9821955	0.88[CEU][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap]
rs9823064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823767	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9824952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9830240	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9835988	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9839588	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9843640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9847461	0.84[CEU][hapmap]
rs9847477	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848610	0.88[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9848766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9850127	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9851302	0.85[CHB][hapmap]
rs9851518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9852861	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9853571	0.88[CEU][hapmap]
rs9854201	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9861749	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9874826	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9875973	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876715	0.82[CHB][hapmap]
rs9878954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9881850	0.84[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs9882273	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9883518	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1009700	chr3:17391240-17486671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9864494	LSM3	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17448000-17476800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:17448000-17506600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:17460600-17475600	Weak transcription	Fetal Intestine Small	intestine
4	chr3:17461600-17476800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:17462400-17521400	Weak transcription	Pancreas	Pancrea
6	chr3:17468400-17473600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:17470600-17473800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:17472200-17473400	Enhancers	NHLF	lung
9	chr3:17472200-17473600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:17472200-17473600	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:17472200-17474000	Enhancers	Brain Hippocampus Middle	brain
12	chr3:17472200-17474600	Enhancers	A549	lung
13	chr3:17472400-17475400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:17472400-17522000	Weak transcription	Fetal Lung	lung
15	chr3:17472600-17474200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:17472600-17474200	Enhancers	NHDF-Ad	bronchial
17	chr3:17472600-17474400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:17472600-17474800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:17472800-17474000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:17472800-17474000	Enhancers	HSMMtube	muscle
21	chr3:17472800-17474200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:17472800-17474400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr3:17472800-17474400	Enhancers	Osteobl	bone
24	chr3:17472800-17503200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:17473000-17473800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:17473000-17474400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:17473200-17473400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:17473200-17473400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:17473200-17473600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr3:17473200-17474200	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links