Variant report

Variant	rs35521582
Chromosome Location	chr3:17496173-17496174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10212255	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10510475	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10865749	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1120412	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11708391	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11717644	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12488687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12493567	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12494513	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13093375	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13318886	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13320647	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13320693	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13327810	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13353435	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1374197	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1446303	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1449882	0.83[EUR][1000 genomes]
rs1449887	0.81[EUR][1000 genomes]
rs1449888	0.81[EUR][1000 genomes]
rs1470667	0.83[EUR][1000 genomes]
rs17043539	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17043541	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17200818	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17200839	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1867772	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028874	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2060623	0.84[EUR][1000 genomes]
rs2121262	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2348004	0.82[EUR][1000 genomes]
rs2348005	0.82[EUR][1000 genomes]
rs2596641	0.82[EUR][1000 genomes]
rs2596643	0.81[EUR][1000 genomes]
rs2596648	0.82[EUR][1000 genomes]
rs2596649	0.82[EUR][1000 genomes]
rs2596650	0.82[EUR][1000 genomes]
rs2733489	0.83[EUR][1000 genomes]
rs2733492	0.82[EUR][1000 genomes]
rs2733495	0.81[EUR][1000 genomes]
rs2733496	0.82[EUR][1000 genomes]
rs2733515	0.84[EUR][1000 genomes]
rs283914	0.82[EUR][1000 genomes]
rs283929	0.87[EUR][1000 genomes]
rs283930	0.87[EUR][1000 genomes]
rs283934	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs283936	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs283940	0.86[EUR][1000 genomes]
rs283942	0.86[EUR][1000 genomes]
rs283945	0.86[EUR][1000 genomes]
rs34892692	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35234876	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4312642	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4582042	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4615062	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62245947	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442680	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6442681	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6442682	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6442683	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6762516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6763593	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6772394	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6787756	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6788763	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6792443	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6799259	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6801690	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7614318	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7623979	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7625175	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7625855	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7632989	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7636787	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7642719	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7644020	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7644389	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7647905	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7648883	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7651278	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7652792	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310516	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310519	0.85[ASN][1000 genomes]
rs9310524	0.85[ASN][1000 genomes]
rs9310526	0.85[ASN][1000 genomes]
rs9756494	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9757339	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9810675	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9812906	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9813532	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9815204	0.85[ASN][1000 genomes]
rs9817290	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9820703	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9821318	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9823064	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823767	0.85[ASN][1000 genomes]
rs9824952	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9830240	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9835988	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9843640	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9847477	0.85[ASN][1000 genomes]
rs9848610	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9848766	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9850127	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9851518	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9852861	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9854201	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9861749	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9864494	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9874826	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9875973	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9878954	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882273	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9883518	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17448000-17506600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17462400-17521400	Weak transcription	Pancreas	Pancrea
3	chr3:17472400-17522000	Weak transcription	Fetal Lung	lung
4	chr3:17472800-17503200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:17473800-17509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:17476000-17497200	Weak transcription	Psoas Muscle	Psoas
7	chr3:17476200-17530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:17477400-17497200	Weak transcription	Dnd41	blood
9	chr3:17477600-17521600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:17480400-17521200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:17480800-17499200	Weak transcription	Primary B cells from cord blood	blood
12	chr3:17480800-17504200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:17483000-17502400	Weak transcription	Primary T cells from cord blood	blood
14	chr3:17484200-17499800	Weak transcription	Fetal Intestine Large	intestine
15	chr3:17490600-17502400	Weak transcription	Spleen	Spleen
16	chr3:17490800-17502600	Weak transcription	Lung	lung
17	chr3:17491200-17497000	Weak transcription	Left Ventricle	heart
18	chr3:17491200-17497200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:17491600-17500800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:17491600-17500800	Weak transcription	Fetal Intestine Small	intestine
21	chr3:17491600-17521200	Weak transcription	Fetal Stomach	stomach
22	chr3:17495200-17499800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:17495400-17521800	Weak transcription	Ovary	ovary

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