Variant report

Variant	rs2733496
Chromosome Location	chr3:17281330-17281331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17276645..17279210-chr3:17280241..17281995,2	MCF-7	breast:
2	chr3:17276830..17278604-chr3:17280473..17282499,2	K562	blood:

Extended variants
information (count: 259 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs10212255	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10510475	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10865749	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1120412	0.88[EUR][1000 genomes]
rs11708391	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11713917	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs12488093	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs12488687	0.87[EUR][1000 genomes]
rs12493567	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12494513	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs13067876	0.91[JPT][hapmap]
rs13093375	0.82[EUR][1000 genomes]
rs13318609	0.92[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs13318886	1.00[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13322641	0.84[EUR][1000 genomes]
rs13327810	0.89[CEU][hapmap];0.85[TSI][hapmap]
rs13353435	0.82[EUR][1000 genomes]
rs1374197	1.00[CEU][hapmap];0.84[GIH][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1375817	0.92[CEU][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1375818	0.84[ASW][hapmap];0.92[CEU][hapmap];0.88[LWK][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1446303	0.88[EUR][1000 genomes]
rs1449879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1449881	0.92[CEU][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs1449882	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1449883	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1449884	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1449885	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1449886	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1449887	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449888	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463218	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1463221	0.89[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs1463222	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1470667	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1545424	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1597393	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1597394	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17043253	0.92[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs17043422	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17043492	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17043494	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs17043539	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs17043541	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs17200818	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs17200839	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1867772	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs187303	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs2028874	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2060623	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2060624	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs2060625	0.92[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2060627	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2060628	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2060629	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2084572	0.92[CEU][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs2121262	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs2122368	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2167118	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2167119	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2247106	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2252237	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2348001	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2348003	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2348004	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348005	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470347	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470577	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470580	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2470581	0.84[EUR][1000 genomes]
rs2470583	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2592099	0.96[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2596636	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596637	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2596638	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596639	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596640	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596641	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596643	0.84[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2596645	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2596646	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2596647	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596648	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2596649	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2596650	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2596652	0.84[EUR][1000 genomes]
rs2596655	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2596656	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs2596657	0.89[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2596658	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2596662	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2596663	0.83[EUR][1000 genomes]
rs2596664	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2596665	0.92[CEU][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2596666	0.89[EUR][1000 genomes]
rs2596667	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2596668	0.85[CEU][hapmap]
rs2596669	0.89[EUR][1000 genomes]
rs2596670	0.89[EUR][1000 genomes]
rs2596671	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2596672	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596673	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596674	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596675	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596676	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596677	0.88[EUR][1000 genomes]
rs2596678	0.92[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2596679	0.96[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2596680	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596681	0.92[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2596682	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733478	0.89[EUR][1000 genomes]
rs2733479	0.96[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2733480	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2733481	0.89[EUR][1000 genomes]
rs2733485	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733486	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2733487	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733491	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2733492	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2733493	0.90[EUR][1000 genomes]
rs2733494	0.90[EUR][1000 genomes]
rs2733495	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2733497	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2733498	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733499	0.92[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2733500	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733501	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733502	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733504	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733507	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733508	0.88[EUR][1000 genomes]
rs2733509	0.89[EUR][1000 genomes]
rs2733510	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733514	0.96[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2733515	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733516	0.92[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2733517	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2733518	0.92[CEU][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733519	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2733520	0.89[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2733521	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733522	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733523	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733524	0.89[EUR][1000 genomes]
rs2733525	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733526	0.89[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2733527	0.89[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2733528	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733529	0.94[ASW][hapmap];0.92[CEU][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2733530	0.84[EUR][1000 genomes]
rs283906	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283907	0.96[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs283908	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs283909	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283911	0.88[EUR][1000 genomes]
rs283912	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283913	0.88[EUR][1000 genomes]
rs283914	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283915	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283916	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283917	0.96[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs283918	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs283919	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs283921	0.88[EUR][1000 genomes]
rs283922	0.89[EUR][1000 genomes]
rs283923	0.89[EUR][1000 genomes]
rs283925	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs283927	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs283929	0.92[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283930	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs283931	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs283934	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs283935	0.92[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs283936	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs283937	0.83[EUR][1000 genomes]
rs283938	0.86[EUR][1000 genomes]
rs283940	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283941	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283942	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283943	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283944	0.92[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283945	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs283946	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283947	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283948	0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs283949	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs28408438	0.84[EUR][1000 genomes]
rs28454413	0.84[EUR][1000 genomes]
rs34502358	0.84[EUR][1000 genomes]
rs34892692	0.80[EUR][1000 genomes]
rs35234876	0.82[EUR][1000 genomes]
rs35521582	0.82[EUR][1000 genomes]
rs4312642	0.90[EUR][1000 genomes]
rs4582042	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4615062	0.82[EUR][1000 genomes]
rs58307801	0.86[EUR][1000 genomes]
rs62245860	0.87[EUR][1000 genomes]
rs62245914	0.84[EUR][1000 genomes]
rs62245947	0.83[EUR][1000 genomes]
rs6442679	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6442680	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6442681	0.89[CEU][hapmap]
rs6442682	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs6442683	0.89[CEU][hapmap]
rs6762516	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6763593	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6763681	0.84[CEU][hapmap]
rs6772394	0.80[EUR][1000 genomes]
rs6785870	0.84[EUR][1000 genomes]
rs6787756	0.88[CEU][hapmap]
rs6790367	0.88[ASN][1000 genomes]
rs6792443	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6799259	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6801690	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6802891	0.84[EUR][1000 genomes]
rs723813	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs728022	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7614318	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7617933	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7623979	0.89[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7625175	0.88[EUR][1000 genomes]
rs7625855	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7630286	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7630433	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7636787	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7642719	0.82[EUR][1000 genomes]
rs7645756	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7647905	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7648883	0.82[EUR][1000 genomes]
rs7651278	0.84[CEU][hapmap]
rs7652792	0.89[EUR][1000 genomes]
rs767685	0.92[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs9310516	0.86[EUR][1000 genomes]
rs9631485	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9810675	0.89[CEU][hapmap]
rs9813532	0.88[EUR][1000 genomes]
rs9817290	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9820703	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9824952	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9830240	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9843640	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs9848610	0.89[CEU][hapmap];0.85[TSI][hapmap]
rs9848766	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9850127	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9851518	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9854201	0.89[CEU][hapmap]
rs9858820	0.96[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9861749	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9864494	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9874826	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9882273	0.88[EUR][1000 genomes]
rs9883518	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17221600-17295800	Weak transcription	HSMM	muscle
2	chr3:17244600-17282000	Weak transcription	Gastric	stomach
3	chr3:17244600-17282800	Weak transcription	Pancreas	Pancrea
4	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
5	chr3:17255000-17297000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:17263200-17307200	Weak transcription	Fetal Intestine Small	intestine
8	chr3:17273600-17289600	Weak transcription	Fetal Intestine Large	intestine
9	chr3:17273600-17330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:17275400-17288600	Weak transcription	GM12878-XiMat	blood
11	chr3:17276600-17281800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:17277400-17298800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:17277600-17328600	Weak transcription	Primary T cells from cord blood	blood
14	chr3:17277800-17282200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:17277800-17297800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:17278600-17285200	Weak transcription	Fetal Kidney	kidney
17	chr3:17278800-17289200	Weak transcription	Brain Substantia Nigra	brain
18	chr3:17279200-17295600	Weak transcription	Adipose Nuclei	Adipose
19	chr3:17279400-17283600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:17279400-17298200	Weak transcription	Liver	Liver
21	chr3:17279400-17330200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:17279800-17281600	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:17279800-17290200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:17279800-17291000	Weak transcription	Primary B cells from cord blood	blood
25	chr3:17279800-17299800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:17279800-17329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:17280000-17285200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:17280000-17289400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:17280000-17299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:17280000-17300400	Weak transcription	Dnd41	blood
31	chr3:17280400-17302400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:17280800-17281600	Enhancers	HepG2	liver
33	chr3:17281000-17281400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links