Variant report

Variant	rs1463222
Chromosome Location	chr3:17221252-17221253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs10510475	0.84[EUR][1000 genomes]
rs11708391	0.86[EUR][1000 genomes]
rs11713917	0.89[CEU][hapmap]
rs12488093	0.89[CEU][hapmap]
rs13067876	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs13318609	0.89[CEU][hapmap]
rs13318886	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1374197	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1375817	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1375818	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1449879	0.84[EUR][1000 genomes]
rs1449881	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1449882	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1449883	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs1449884	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1449885	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1449886	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1449887	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1449888	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1463218	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1463221	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1470667	0.92[EUR][1000 genomes]
rs1545424	0.85[EUR][1000 genomes]
rs1597393	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1597394	0.85[EUR][1000 genomes]
rs17043253	0.91[JPT][hapmap]
rs17043422	0.89[CEU][hapmap]
rs17043492	0.96[CEU][hapmap]
rs17043494	0.89[CEU][hapmap]
rs17200818	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs17200839	0.84[EUR][1000 genomes]
rs1867772	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs187303	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs2028874	0.84[EUR][1000 genomes]
rs2060623	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2060624	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060625	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060627	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060628	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2060629	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2084572	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2122368	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2167118	0.80[EUR][1000 genomes]
rs2167119	0.86[EUR][1000 genomes]
rs2247106	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2252237	0.85[EUR][1000 genomes]
rs2348001	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2348003	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2348004	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2348005	0.96[CEU][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2470347	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2470577	0.83[EUR][1000 genomes]
rs2470580	0.88[CEU][hapmap]
rs2470581	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2470583	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2592099	0.92[CEU][hapmap]
rs2596636	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596637	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596638	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596639	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596640	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596641	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596643	0.92[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596645	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596646	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2596647	0.84[EUR][1000 genomes]
rs2596648	0.96[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596649	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596650	0.96[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596655	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596656	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2596657	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2596658	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596662	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2596663	0.85[EUR][1000 genomes]
rs2596664	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2596665	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2596666	0.85[EUR][1000 genomes]
rs2596667	0.85[EUR][1000 genomes]
rs2596668	0.82[CEU][hapmap]
rs2596669	0.85[EUR][1000 genomes]
rs2596670	0.85[EUR][1000 genomes]
rs2596671	0.85[EUR][1000 genomes]
rs2596672	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2596673	0.85[EUR][1000 genomes]
rs2596674	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596675	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2596677	0.82[EUR][1000 genomes]
rs2596678	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596679	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596680	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596681	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2596682	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2733478	0.83[EUR][1000 genomes]
rs2733479	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2733480	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2733481	0.83[EUR][1000 genomes]
rs2733485	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733486	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733487	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733489	0.92[EUR][1000 genomes]
rs2733491	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733492	0.96[CEU][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733493	0.84[EUR][1000 genomes]
rs2733494	0.84[EUR][1000 genomes]
rs2733495	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733496	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733497	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733498	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733499	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733500	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733501	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733502	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2733504	0.83[EUR][1000 genomes]
rs2733507	0.85[EUR][1000 genomes]
rs2733508	0.83[EUR][1000 genomes]
rs2733509	0.85[EUR][1000 genomes]
rs2733510	0.86[EUR][1000 genomes]
rs2733514	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733515	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2733516	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2733517	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733518	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733519	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2733520	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733521	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733522	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2733523	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2733524	0.83[EUR][1000 genomes]
rs2733525	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2733526	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733527	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2733528	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733529	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2733530	0.91[EUR][1000 genomes]
rs283906	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs283908	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs283909	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs283911	0.82[EUR][1000 genomes]
rs283912	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs283913	0.82[EUR][1000 genomes]
rs283914	0.90[EUR][1000 genomes]
rs283915	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs283916	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs283917	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs283918	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs283919	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs283921	0.82[EUR][1000 genomes]
rs283922	0.83[EUR][1000 genomes]
rs283923	0.83[EUR][1000 genomes]
rs283925	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs283927	0.89[CEU][hapmap]
rs283929	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs283930	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs283931	0.89[CEU][hapmap]
rs283934	0.84[EUR][1000 genomes]
rs283935	0.89[CEU][hapmap]
rs283936	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283938	0.80[EUR][1000 genomes]
rs283940	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs283941	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs283942	0.90[EUR][1000 genomes]
rs283943	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs283944	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs283945	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs283946	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs283947	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs283948	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs283949	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs35185755	0.83[ASN][1000 genomes]
rs4312642	0.84[EUR][1000 genomes]
rs62245860	0.81[EUR][1000 genomes]
rs6442679	0.89[CEU][hapmap]
rs6442680	0.85[CEU][hapmap]
rs6762516	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6763593	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6763681	0.82[CEU][hapmap]
rs6801690	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs723813	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs728022	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7614318	0.83[EUR][1000 genomes]
rs7617933	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs7623979	0.85[CEU][hapmap]
rs7630286	0.89[CEU][hapmap]
rs7630433	0.89[CEU][hapmap]
rs7645756	0.89[CEU][hapmap]
rs7647905	0.84[EUR][1000 genomes]
rs7652792	0.83[EUR][1000 genomes]
rs767685	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs9631485	0.91[JPT][hapmap]
rs9817290	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9820703	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9824952	0.82[EUR][1000 genomes]
rs9830240	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9843640	0.83[EUR][1000 genomes]
rs9848610	0.85[CEU][hapmap]
rs9848766	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9850127	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9858820	0.91[JPT][hapmap]
rs9874826	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
2	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
3	chr3:17198400-17225200	Weak transcription	HMEC	breast
4	chr3:17200800-17225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:17201200-17236200	Weak transcription	Fetal Brain Male	brain
6	chr3:17203200-17224400	Weak transcription	A549	lung
7	chr3:17203800-17244200	Weak transcription	Colonic Mucosa	Colon
8	chr3:17208000-17223600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:17208200-17244000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:17208400-17223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:17208400-17224400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:17208400-17228600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:17208400-17243800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:17208400-17244000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:17208600-17224600	Weak transcription	HepG2	liver
16	chr3:17208800-17234400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:17209000-17234000	Weak transcription	Brain Substantia Nigra	brain
18	chr3:17209200-17224400	Weak transcription	Placenta	Placenta
19	chr3:17209200-17224800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:17209200-17225000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:17209200-17225600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:17209400-17224600	Weak transcription	Fetal Lung	lung
23	chr3:17209600-17223000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:17209600-17224400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:17209600-17224400	Weak transcription	Liver	Liver
26	chr3:17209600-17224400	Weak transcription	Lung	lung
27	chr3:17209600-17224600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:17209600-17224600	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:17209600-17234000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:17209600-17236800	Weak transcription	Gastric	stomach
31	chr3:17210000-17224400	Weak transcription	Fetal Intestine Large	intestine
32	chr3:17210000-17244000	Weak transcription	Esophagus	oesophagus
33	chr3:17210400-17224600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:17210800-17222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:17212200-17224600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:17215600-17236800	Weak transcription	Pancreas	Pancrea
37	chr3:17217600-17224400	Weak transcription	Fetal Stomach	stomach
38	chr3:17217600-17224400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:17217600-17225200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:17217600-17225200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:17217600-17225600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:17217600-17242600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:17217800-17222600	Weak transcription	Adipose Nuclei	Adipose
44	chr3:17217800-17224400	Weak transcription	NHEK	skin
45	chr3:17217800-17224800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:17217800-17224800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:17217800-17225000	Weak transcription	Ovary	ovary
48	chr3:17217800-17225200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:17217800-17232000	Weak transcription	Spleen	Spleen
50	chr3:17217800-17234200	Weak transcription	H1 Cell Line	embryonic stem cell

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