The 2.0 version of rSNPBase

Variant report

Variant rs283913
Chromosome Location chr3:17330957-17330958
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17255200-17363800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:17298800-17373000 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr3:17301400-17335400 Weak transcription Ovary ovary
4 chr3:17313800-17332200 Weak transcription Primary hematopoietic stem cells blood
5 chr3:17315000-17332400 Weak transcription GM12878-XiMat blood
6 chr3:17319600-17332400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr3:17319600-17332400 Weak transcription Adipose Nuclei Adipose
8 chr3:17319800-17351200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr3:17320800-17332200 Weak transcription Colonic Mucosa Colon
10 chr3:17321200-17332200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr3:17321600-17332200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr3:17321600-17354200 Weak transcription Placenta Placenta
13 chr3:17321800-17332000 Weak transcription Primary T helper cells fromperipheralblood blood
14 chr3:17322200-17342800 Weak transcription Brain Cingulate Gyrus brain
15 chr3:17323000-17334600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr3:17324600-17333000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr3:17327400-17333000 Weak transcription Duodenum Mucosa Duodenum
18 chr3:17327800-17343000 Weak transcription Brain Inferior Temporal Lobe brain
19 chr3:17328000-17332400 Weak transcription Fetal Lung lung
20 chr3:17328400-17341400 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr3:17328600-17331400 Strong transcription Primary T cells from cord blood blood
22 chr3:17328600-17332400 Weak transcription HepG2 liver
23 chr3:17328800-17334000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr3:17328800-17334600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr3:17328800-17343800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr3:17329000-17331600 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr3:17329000-17332400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr3:17329000-17333600 Weak transcription Brain Angular Gyrus brain
29 chr3:17329000-17334400 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr3:17329000-17336400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr3:17329000-17340400 Weak transcription Rectal Smooth Muscle rectum
32 chr3:17329000-17342000 Weak transcription HSMM muscle
33 chr3:17329000-17344200 Weak transcription Psoas Muscle Psoas
34 chr3:17329200-17331200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr3:17329200-17331600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr3:17329200-17333800 Strong transcription Primary B cells from cord blood blood
37 chr3:17329200-17343000 Weak transcription Brain Anterior Caudate brain
38 chr3:17329200-17344400 Weak transcription Brain Substantia Nigra brain
39 chr3:17329600-17333400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr3:17329600-17342000 Weak transcription Fetal Thymus thymus
41 chr3:17329800-17331200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr3:17329800-17333800 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr3:17330000-17331000 Strong transcription Fetal Muscle Trunk muscle
44 chr3:17330000-17333000 Weak transcription HSMMtube muscle
45 chr3:17330000-17333600 Strong transcription Primary B cells from peripheral blood blood
46 chr3:17330000-17341600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr3:17330200-17331000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr3:17330200-17331000 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr3:17330200-17331000 Strong transcription Fetal Intestine Large intestine
50 chr3:17330200-17331000 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015