Variant report

Variant	rs9812199
Chromosome Location	chr3:17555377-17555378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17552302..17553888-chr3:17553996..17555842,2	K562	blood:

Extended variants
information (count: 269 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:255)

rs_ID	r²[population]
rs10212255	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510475	0.89[CEU][hapmap]
rs10510477	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10510478	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs10865749	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11128836	0.92[CEU][hapmap]
rs11128837	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11128838	0.92[CEU][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs11128839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11128843	0.81[EUR][1000 genomes]
rs11128844	0.84[EUR][1000 genomes]
rs11128848	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1120412	0.81[EUR][1000 genomes]
rs11713917	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717644	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719266	0.84[EUR][1000 genomes]
rs11720653	1.00[ASN][1000 genomes]
rs11927637	0.83[EUR][1000 genomes]
rs11927654	0.92[CEU][hapmap]
rs11929111	0.86[EUR][1000 genomes]
rs12487248	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs12487916	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12488093	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12488687	0.81[EUR][1000 genomes]
rs12493567	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12494513	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497320	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12631291	0.86[EUR][1000 genomes]
rs12632570	0.86[EUR][1000 genomes]
rs12634674	0.85[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13065637	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071728	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071934	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13083917	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs13085167	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13093375	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095571	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13096559	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs13097908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13317478	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13318609	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318886	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs13320647	0.92[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13320693	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13322641	0.86[EUR][1000 genomes]
rs13327810	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353435	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374197	0.85[CEU][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs1446303	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs17043422	0.92[CEU][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs17043492	0.92[CEU][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs17043494	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043539	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043541	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200818	0.85[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs17200839	0.88[CEU][hapmap]
rs17273020	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs1867772	0.83[CEU][hapmap]
rs187303	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2028874	0.88[CEU][hapmap]
rs2060624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060625	0.82[EUR][1000 genomes]
rs2060627	0.82[EUR][1000 genomes]
rs2121262	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2470580	0.91[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs2592099	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs2596652	0.86[EUR][1000 genomes]
rs283906	0.82[EUR][1000 genomes]
rs283907	0.82[EUR][1000 genomes]
rs283908	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283909	0.82[EUR][1000 genomes]
rs283911	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283912	0.82[EUR][1000 genomes]
rs283913	0.82[EUR][1000 genomes]
rs283926	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs283927	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283929	0.85[CEU][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap]
rs283930	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs283931	0.92[CEU][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs283935	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283936	0.85[CEU][hapmap]
rs283937	0.82[EUR][1000 genomes]
rs283938	0.84[EUR][1000 genomes]
rs283939	1.00[ASN][1000 genomes]
rs283941	0.84[EUR][1000 genomes]
rs283943	0.84[EUR][1000 genomes]
rs283944	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283946	0.84[EUR][1000 genomes]
rs283947	0.84[EUR][1000 genomes]
rs283948	0.89[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs283949	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408438	0.86[EUR][1000 genomes]
rs28454413	0.86[EUR][1000 genomes]
rs34297417	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34485427	0.85[EUR][1000 genomes]
rs34487714	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34502358	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786175	0.84[EUR][1000 genomes]
rs34892692	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990533	0.84[EUR][1000 genomes]
rs35126965	0.82[EUR][1000 genomes]
rs35234876	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35642812	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35697509	0.86[EUR][1000 genomes]
rs4128509	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243835	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243836	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243838	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4377510	0.92[CEU][hapmap]
rs4431138	0.86[EUR][1000 genomes]
rs4444738	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4470554	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4482690	0.86[EUR][1000 genomes]
rs4484221	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4566567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4568172	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4582042	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4589965	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4602424	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4615062	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4637311	0.91[CEU][hapmap]
rs4908939	0.82[EUR][1000 genomes]
rs4908958	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908963	0.86[EUR][1000 genomes]
rs4908964	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908966	0.86[EUR][1000 genomes]
rs4908969	0.85[EUR][1000 genomes]
rs4908987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908992	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4909009	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4909010	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4909012	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5014632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55701200	0.85[EUR][1000 genomes]
rs57309958	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61081795	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62245914	0.86[EUR][1000 genomes]
rs6442679	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6442680	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6442681	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442682	0.89[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6442683	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6577616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577617	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577619	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577622	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577643	0.86[EUR][1000 genomes]
rs6577644	0.86[EUR][1000 genomes]
rs6762516	0.85[CEU][hapmap]
rs6763593	0.85[CEU][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap]
rs6763681	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6768637	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6772394	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779834	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6784025	0.91[CEU][hapmap]
rs67851870	1.00[ASN][1000 genomes]
rs6785870	0.86[EUR][1000 genomes]
rs6787756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788763	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6789697	0.96[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs6792422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6792443	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6795189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6797952	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6799259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801690	0.88[CEU][hapmap]
rs6803312	0.86[EUR][1000 genomes]
rs6804837	0.84[EUR][1000 genomes]
rs6807020	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs6809062	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6810235	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7431897	0.83[EUR][1000 genomes]
rs7614318	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7617683	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7622878	0.81[EUR][1000 genomes]
rs7623979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625175	0.81[EUR][1000 genomes]
rs7625855	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7630286	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630433	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630695	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7632240	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7632989	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633601	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7636787	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7642719	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7644020	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644389	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7645756	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647905	0.89[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs7647914	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7647928	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7648883	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651278	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651998	0.92[CEU][hapmap]
rs7652156	0.84[EUR][1000 genomes]
rs7652792	0.81[EUR][1000 genomes]
rs8179891	0.92[CEU][hapmap]
rs8179983	0.86[EUR][1000 genomes]
rs9310519	0.81[TSI][hapmap]
rs9310523	1.00[ASN][1000 genomes]
rs9310526	0.92[CEU][hapmap]
rs9310528	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs9681232	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9681617	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681644	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9681893	0.86[EUR][1000 genomes]
rs9756494	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9757339	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9810675	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812906	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9813532	0.81[EUR][1000 genomes]
rs9815204	0.96[CEU][hapmap]
rs9816920	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9817290	0.88[CEU][hapmap]
rs9820703	0.85[CEU][hapmap]
rs9821318	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9821955	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823064	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9823767	0.92[CEU][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9824191	1.00[CHB][hapmap]
rs9824952	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9830240	0.85[CEU][hapmap]
rs9835988	0.83[EUR][1000 genomes]
rs9839588	0.92[CEU][hapmap]
rs9843640	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs9847461	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847477	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9848610	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848766	0.84[CEU][hapmap]
rs9850127	0.85[CEU][hapmap]
rs9851518	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9852861	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9853571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854201	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855515	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs9857910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9861749	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9864494	0.88[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs9867064	0.82[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9870741	1.00[ASN][1000 genomes]
rs9875973	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9878954	0.89[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs9880456	0.86[EUR][1000 genomes]
rs9880971	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881089	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881850	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882273	0.81[EUR][1000 genomes]
rs9883518	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985472	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv589850	chr3:17543829-17563378	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv980049	chr3:17551786-17555769	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9812199	LSM3	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
2	chr3:17523200-17556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17534000-17559800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:17534200-17561600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:17536200-17555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:17536400-17559800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:17536400-17562600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:17536400-17568800	Weak transcription	GM12878-XiMat	blood
10	chr3:17536400-17574800	Weak transcription	Dnd41	blood
11	chr3:17536600-17559600	Weak transcription	Fetal Stomach	stomach
12	chr3:17536600-17560400	Weak transcription	Fetal Intestine Large	intestine
13	chr3:17536600-17561600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:17536600-17562200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
16	chr3:17537200-17560000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:17547000-17557400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:17548600-17579200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:17548800-17564600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr3:17549400-17561800	Weak transcription	Small Intestine	intestine
21	chr3:17550000-17560400	Weak transcription	Esophagus	oesophagus
22	chr3:17550000-17560600	Weak transcription	Fetal Lung	lung
23	chr3:17550000-17583800	Weak transcription	Primary B cells from cord blood	blood
24	chr3:17550200-17560000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr3:17550200-17574800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr3:17551200-17560000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:17554200-17556600	Enhancers	A549	lung
28	chr3:17554800-17559800	Weak transcription	Pancreas	Pancrea

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