Variant report

Variant	rs9310528
Chromosome Location	chr3:17661932-17661933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17661913..17664495-chr3:17666006..17668523,2	MCF-7	breast:

Extended variants
information (count: 234 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:227)

rs_ID	r²[population]
rs10433561	0.84[EUR][1000 genomes]
rs10510477	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10510478	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128829	0.85[CHB][hapmap]
rs11128830	0.85[CHB][hapmap]
rs11128833	0.85[CHB][hapmap]
rs11128836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11128837	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11128839	1.00[CEU][hapmap]
rs11128840	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11128841	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128842	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128843	0.81[EUR][1000 genomes]
rs11128844	0.85[EUR][1000 genomes]
rs11128848	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11128849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128852	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11708672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719266	0.83[EUR][1000 genomes]
rs11719326	0.93[EUR][1000 genomes]
rs11914537	0.85[CHB][hapmap]
rs11914797	0.82[CHB][hapmap]
rs11915560	0.85[CHB][hapmap]
rs11918295	0.85[CHB][hapmap]
rs11920557	0.82[CHB][hapmap]
rs11920751	0.85[CHB][hapmap]
rs11922534	0.85[CHB][hapmap]
rs11923589	0.85[CHB][hapmap]
rs11923635	0.85[CHB][hapmap]
rs11924970	0.85[CHB][hapmap]
rs11925066	0.85[CHB][hapmap]
rs11927436	0.85[CHB][hapmap]
rs11927637	0.82[EUR][1000 genomes]
rs11927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11929111	0.85[EUR][1000 genomes]
rs12106762	0.85[CHB][hapmap]
rs12106770	0.85[CHB][hapmap]
rs12106899	0.85[CHB][hapmap]
rs12106900	0.85[CHB][hapmap]
rs12185952	0.85[CHB][hapmap]
rs12487248	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487916	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12488591	0.85[CEU][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs12490933	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12497320	0.96[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12631291	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12632570	0.86[EUR][1000 genomes]
rs12634674	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12634893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13065637	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13069155	0.92[EUR][1000 genomes]
rs13071728	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13071934	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13076724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13079096	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs13083917	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13085167	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13096559	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13097908	0.96[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13320647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13327810	0.89[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs1446303	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17043623	0.85[CHB][hapmap]
rs17043631	0.85[CHB][hapmap]
rs17043643	0.85[CHB][hapmap]
rs17043652	0.85[CHB][hapmap]
rs17044053	0.85[CHB][hapmap]
rs17044072	0.85[CHB][hapmap]
rs2033378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2121262	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34002492	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34297417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34485427	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34487714	0.85[EUR][1000 genomes]
rs34786175	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34990533	0.84[EUR][1000 genomes]
rs35460334	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35642812	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35697509	0.85[EUR][1000 genomes]
rs36172181	0.96[EUR][1000 genomes]
rs4128509	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243835	0.96[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243836	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243837	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4243838	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4260468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4312680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4349529	0.90[EUR][1000 genomes]
rs4377510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4408889	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4431138	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4435673	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4435674	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4444738	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4470554	0.85[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4482690	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4484221	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4488868	0.90[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4566567	0.96[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4566568	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs4568172	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4589965	0.87[EUR][1000 genomes]
rs4602424	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4611850	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs4627740	0.85[CHB][hapmap]
rs4637311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4643736	0.89[EUR][1000 genomes]
rs4908938	0.93[EUR][1000 genomes]
rs4908939	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs4908940	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4908958	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908963	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908964	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4908965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs4908966	0.85[EUR][1000 genomes]
rs4908967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4908968	0.94[EUR][1000 genomes]
rs4908969	0.85[EUR][1000 genomes]
rs4908970	0.93[EUR][1000 genomes]
rs4908971	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4908973	0.80[EUR][1000 genomes]
rs4908987	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908992	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4909009	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4909010	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4909012	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5014632	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55701200	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56059241	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57309958	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61081795	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61236237	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6442683	0.89[CEU][hapmap]
rs6577616	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6577617	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6577618	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6577619	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6577622	0.96[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6577643	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6577644	0.85[EUR][1000 genomes]
rs6768637	0.96[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6772394	0.88[CEU][hapmap]
rs6779834	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6780587	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6784025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788763	0.81[MEX][hapmap];0.89[TSI][hapmap]
rs6788957	0.85[CHB][hapmap]
rs6789467	0.90[EUR][1000 genomes]
rs6789697	0.96[CEU][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6792422	0.92[CEU][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6795189	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6796448	0.80[EUR][1000 genomes]
rs6797952	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs6803312	0.84[EUR][1000 genomes]
rs6803999	0.85[CHB][hapmap]
rs6804837	0.84[EUR][1000 genomes]
rs6806610	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6807020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6809062	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6810235	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7427235	0.85[CHB][hapmap]
rs7427588	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs7431897	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7432241	0.85[CHB][hapmap]
rs7609916	0.85[CEU][hapmap]
rs7613953	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7617683	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7618836	0.85[CHB][hapmap]
rs7619879	0.85[CHB][hapmap]
rs7625855	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7627064	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7627732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7630695	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7632240	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7633601	0.87[EUR][1000 genomes]
rs7644020	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs7644389	0.89[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs7645459	0.81[EUR][1000 genomes]
rs7647914	0.86[EUR][1000 genomes]
rs7647928	0.86[EUR][1000 genomes]
rs7650295	0.85[CHB][hapmap]
rs7650617	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7651998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7652156	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs8179891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8179983	0.96[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9310519	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs9310520	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310524	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9310526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9310527	0.81[YRI][hapmap]
rs9681232	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9681617	0.84[EUR][1000 genomes]
rs9681644	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs9681893	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9756494	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9757339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9812199	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs9812906	0.89[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs9815204	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9816920	0.84[EUR][1000 genomes]
rs9821318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9821955	0.92[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs9823064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9823767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9835988	0.81[EUR][1000 genomes]
rs9839588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9847461	0.88[CEU][hapmap]
rs9847477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9851302	0.85[CHB][hapmap]
rs9853571	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9854201	0.89[CEU][hapmap]
rs9857910	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9860854	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9864494	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs9867064	0.81[EUR][1000 genomes]
rs9875973	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9876715	0.82[CHB][hapmap]
rs9878954	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs9880456	0.85[EUR][1000 genomes]
rs9880971	0.82[EUR][1000 genomes]
rs9881089	0.82[EUR][1000 genomes]
rs9881850	0.88[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9310528	LSM3	cis	parietal	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:17639200-17676800	Weak transcription	Ovary	ovary
6	chr3:17641400-17663000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:17647000-17670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:17647400-17673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:17647800-17663200	Weak transcription	A549	lung
10	chr3:17647800-17673000	Weak transcription	Psoas Muscle	Psoas
11	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
12	chr3:17651400-17673200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:17655600-17664600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:17657600-17663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:17657600-17667000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:17657600-17673200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:17657800-17668200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:17657800-17681200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:17658000-17665400	Weak transcription	Fetal Lung	lung
21	chr3:17658000-17667800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:17658000-17669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:17658200-17668400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:17658400-17665000	Weak transcription	Thymus	Thymus
25	chr3:17658400-17665800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:17658400-17668000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:17658600-17663200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:17658600-17664800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:17658600-17667600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:17658800-17677200	Weak transcription	Small Intestine	intestine
31	chr3:17659000-17663400	Weak transcription	Primary T cells from cord blood	blood
32	chr3:17659000-17665000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:17659400-17664200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:17659400-17676800	Weak transcription	Right Atrium	heart
35	chr3:17659800-17662000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr3:17659800-17672800	Weak transcription	Fetal Heart	heart
37	chr3:17660200-17668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:17660400-17663000	Weak transcription	Liver	Liver
39	chr3:17660400-17663600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:17660400-17663600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:17660400-17665000	Weak transcription	Esophagus	oesophagus
42	chr3:17660400-17665400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:17660400-17665400	Weak transcription	Placenta	Placenta
44	chr3:17660400-17665600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:17660400-17665800	Weak transcription	Fetal Thymus	thymus
46	chr3:17660400-17666600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:17660400-17666800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:17660400-17667200	Weak transcription	Spleen	Spleen
49	chr3:17660400-17667800	Weak transcription	Brain Anterior Caudate	brain
50	chr3:17660400-17668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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