Variant report

Variant	rs4377510
Chromosome Location	chr3:17686288-17686289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17685317..17686887-chr3:17783169..17785633,3	MCF-7	breast:
2	chr3:17675340..17678330-chr3:17685687..17687246,2	K562	blood:
3	chr3:17682592..17685089-chr3:17685251..17686866,2	K562	blood:
4	chr3:17681918..17684024-chr3:17685231..17687253,2	MCF-7	breast:
5	chr3:17685895..17687359-chr3:17882432..17883403,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs10433560	0.83[EUR][1000 genomes]
rs10433561	0.87[EUR][1000 genomes]
rs10510477	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10510478	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128833	0.85[CHB][hapmap]
rs11128836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128837	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128839	1.00[CEU][hapmap]
rs11128840	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128841	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128842	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128843	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11128844	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128848	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11128850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11128852	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11708672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11719266	0.87[EUR][1000 genomes]
rs11719326	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11914537	0.85[CHB][hapmap]
rs11914797	0.82[CHB][hapmap]
rs11915560	0.85[CHB][hapmap]
rs11918295	0.85[CHB][hapmap]
rs11920557	0.82[CHB][hapmap]
rs11920751	0.85[CHB][hapmap]
rs11922534	0.85[CHB][hapmap]
rs11923589	0.85[CHB][hapmap]
rs11923635	0.85[CHB][hapmap]
rs11924970	0.85[CHB][hapmap]
rs11925066	0.85[CHB][hapmap]
rs11927436	0.85[CHB][hapmap]
rs11927637	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11929111	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12106899	0.85[CHB][hapmap]
rs12106900	0.85[CHB][hapmap]
rs12185952	0.85[CHB][hapmap]
rs12487248	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12487916	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12488591	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs12490933	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12497320	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12631291	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12632570	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12634674	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12634893	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13065637	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13069155	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13071728	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13071934	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13076724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13079096	0.93[CEU][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs13083917	0.93[CEU][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13085167	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13096559	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13097908	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13320647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17043643	0.85[CHB][hapmap]
rs17043652	0.85[CHB][hapmap]
rs17044053	0.85[CHB][hapmap]
rs17044072	0.85[CHB][hapmap]
rs2033378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34002492	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34297417	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34485427	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34487714	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34786175	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34990533	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35460334	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35642812	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35697509	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36172181	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128509	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243835	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243836	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243837	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4243838	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4260468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4312680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4349529	0.94[EUR][1000 genomes]
rs4408889	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4431138	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4435673	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4435674	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4444738	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4470554	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4482690	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4484221	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4488868	0.94[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4566567	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4566568	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4568172	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4589965	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4602424	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4611850	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs4637311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4643736	0.93[EUR][1000 genomes]
rs4908938	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908939	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4908940	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs4908958	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908963	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908964	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908966	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908968	0.98[EUR][1000 genomes]
rs4908969	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908970	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908971	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908972	0.83[EUR][1000 genomes]
rs4908973	0.84[EUR][1000 genomes]
rs4908987	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908992	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4909009	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4909010	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4909012	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5014632	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55701200	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56059241	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309958	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61081795	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61236237	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577616	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577617	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577618	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6577619	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577622	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577643	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6577644	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6768637	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6772394	0.89[CEU][hapmap]
rs6779834	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6780587	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789467	0.93[EUR][1000 genomes]
rs6789697	0.96[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6792422	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6795189	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6796448	0.84[EUR][1000 genomes]
rs6797952	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6803312	0.88[EUR][1000 genomes]
rs6804837	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6806610	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6807020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809062	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6810235	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7427235	0.85[CHB][hapmap]
rs7427588	0.85[CEU][hapmap]
rs7431897	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7432241	0.85[CHB][hapmap]
rs7609916	0.86[CEU][hapmap]
rs7613953	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7617683	0.96[CEU][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7618836	0.85[CHB][hapmap]
rs7619879	0.85[CHB][hapmap]
rs7622878	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7627064	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7627732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7630695	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7632240	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7633601	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7644389	0.89[CEU][hapmap]
rs7645459	0.85[EUR][1000 genomes]
rs7647914	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7647928	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7650295	0.85[CHB][hapmap]
rs7650617	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7651998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652156	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8179891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8179983	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9310519	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9310520	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310524	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9310526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9310528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9681232	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9681617	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681644	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9681893	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9756494	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9757339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9812199	0.92[CEU][hapmap]
rs9812906	0.89[CEU][hapmap]
rs9815204	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9816920	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9821318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9821955	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9823064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9823767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9835988	0.81[EUR][1000 genomes]
rs9839588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847461	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9847477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9851302	0.85[CHB][hapmap]
rs9853571	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9857910	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9860854	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9867064	0.84[EUR][1000 genomes]
rs9875973	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9876715	0.82[CHB][hapmap]
rs9878954	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9880456	0.89[EUR][1000 genomes]
rs9880971	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9881089	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9881850	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:17677600-17686800	Weak transcription	Small Intestine	intestine
7	chr3:17681400-17689800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:17681600-17686400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:17681600-17686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:17681600-17686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:17681600-17687000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:17681600-17687000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:17682200-17686800	Weak transcription	NHEK	skin
15	chr3:17683000-17686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:17684000-17687000	Enhancers	HSMM	muscle
17	chr3:17684600-17687000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:17684600-17687200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:17684800-17686600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:17684800-17687000	Enhancers	Osteobl	bone
21	chr3:17685400-17687000	Weak transcription	Brain Substantia Nigra	brain
22	chr3:17685600-17686800	Weak transcription	Brain Germinal Matrix	brain
23	chr3:17685600-17686800	Weak transcription	HSMMtube	muscle
24	chr3:17685800-17686600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:17685800-17686800	Weak transcription	Fetal Lung	lung
26	chr3:17685800-17686800	Weak transcription	A549	lung
27	chr3:17685800-17687000	Weak transcription	Brain Anterior Caudate	brain
28	chr3:17686200-17686600	Enhancers	Brain Hippocampus Middle	brain

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