Variant report

Variant	rs13069155
Chromosome Location	chr3:17767422-17767423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17751695..17753389-chr3:17765736..17768612,2	K562	blood:
2	chr3:17765943..17768772-chr3:17811350..17814290,2	K562	blood:
3	chr3:17760207..17762271-chr3:17765982..17768096,2	K562	blood:

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10433560	0.83[EUR][1000 genomes]
rs10433561	0.87[EUR][1000 genomes]
rs10510477	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10510478	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128836	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128837	0.86[EUR][1000 genomes]
rs11128838	0.96[EUR][1000 genomes]
rs11128840	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128841	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11128842	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11128843	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11128844	0.84[EUR][1000 genomes]
rs11128848	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128849	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11128850	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11128852	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11708672	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11719266	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11719326	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11927637	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11927654	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11929111	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12487248	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487916	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12488591	0.84[EUR][1000 genomes]
rs12490933	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12497320	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12631291	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12632570	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12634674	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12634893	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13061771	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13065637	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071728	0.86[EUR][1000 genomes]
rs13071934	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13076724	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13079096	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13083917	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13085167	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13096559	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13097908	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13320647	0.85[EUR][1000 genomes]
rs34002492	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34297417	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34485427	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34487714	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34786175	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34990533	0.85[EUR][1000 genomes]
rs35460334	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35642812	0.87[EUR][1000 genomes]
rs35697509	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36172181	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4128509	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243835	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243836	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4243837	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4243838	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4312680	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4349529	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4377510	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4408889	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4431138	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4435673	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4435674	0.84[EUR][1000 genomes]
rs4444738	0.88[EUR][1000 genomes]
rs4470554	0.86[EUR][1000 genomes]
rs4482690	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4484221	0.86[EUR][1000 genomes]
rs4488868	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4513482	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4566567	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4566568	0.84[EUR][1000 genomes]
rs4568172	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4589965	0.86[EUR][1000 genomes]
rs4602424	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4611850	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4637311	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4643736	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4908938	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908939	0.81[EUR][1000 genomes]
rs4908940	0.84[EUR][1000 genomes]
rs4908958	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908963	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4908964	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4908965	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908966	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4908967	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908968	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908969	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4908970	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908971	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908972	0.83[EUR][1000 genomes]
rs4908973	0.84[EUR][1000 genomes]
rs4908987	0.86[EUR][1000 genomes]
rs4908992	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4909009	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4909010	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4909012	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5014632	0.86[EUR][1000 genomes]
rs55701200	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56059241	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57309958	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61081795	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61236237	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6577616	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577617	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577618	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6577619	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577622	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577643	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6577644	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6768637	0.86[EUR][1000 genomes]
rs6779834	0.85[EUR][1000 genomes]
rs6780587	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6784025	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6789467	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6789697	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6792422	0.86[EUR][1000 genomes]
rs6795189	0.86[EUR][1000 genomes]
rs6796448	0.84[EUR][1000 genomes]
rs6797952	0.86[EUR][1000 genomes]
rs6803312	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6804837	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6806610	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6807020	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6809062	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6810235	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7431897	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7613953	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7617683	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7622878	0.86[EUR][1000 genomes]
rs7627064	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7627732	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7630695	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7632240	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7633601	0.86[EUR][1000 genomes]
rs7645459	0.85[EUR][1000 genomes]
rs7647914	0.88[EUR][1000 genomes]
rs7647928	0.88[EUR][1000 genomes]
rs7650617	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651998	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7652156	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8179891	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8179983	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9310524	0.91[EUR][1000 genomes]
rs9310526	0.91[EUR][1000 genomes]
rs9310528	0.92[EUR][1000 genomes]
rs9681232	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9681617	0.84[EUR][1000 genomes]
rs9681893	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9756494	0.84[EUR][1000 genomes]
rs9757339	0.83[EUR][1000 genomes]
rs9815204	0.92[EUR][1000 genomes]
rs9816920	0.88[EUR][1000 genomes]
rs9821318	0.85[EUR][1000 genomes]
rs9821955	0.82[EUR][1000 genomes]
rs9823767	0.91[EUR][1000 genomes]
rs9839588	0.94[EUR][1000 genomes]
rs9847461	0.81[EUR][1000 genomes]
rs9847477	0.91[EUR][1000 genomes]
rs9853571	0.82[EUR][1000 genomes]
rs9857910	0.86[EUR][1000 genomes]
rs9860854	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9867064	0.83[EUR][1000 genomes]
rs9875973	0.86[EUR][1000 genomes]
rs9880456	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9880971	0.82[EUR][1000 genomes]
rs9881089	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17755200-17771800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:17755400-17781600	Weak transcription	Pancreas	Pancrea
3	chr3:17756200-17774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:17756200-17782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:17756400-17780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:17756400-17782800	Weak transcription	Aorta	Aorta
7	chr3:17756600-17767600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:17756600-17771800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:17756600-17782200	Weak transcription	HSMM	muscle
10	chr3:17756800-17781600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:17756800-17782200	Weak transcription	NHLF	lung
12	chr3:17757000-17780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:17757200-17767600	Weak transcription	K562	blood
14	chr3:17757200-17767800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:17757200-17767800	Weak transcription	Brain Anterior Caudate	brain
16	chr3:17757200-17768000	Weak transcription	Thymus	Thymus
17	chr3:17757200-17771600	Weak transcription	HUVEC	blood vessel
18	chr3:17757200-17774400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:17757200-17780400	Weak transcription	Adipose Nuclei	Adipose
20	chr3:17757200-17780800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:17757200-17782200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:17757400-17769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:17757400-17770600	Weak transcription	Placenta	Placenta
24	chr3:17757400-17771800	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:17757400-17780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:17757400-17780600	Weak transcription	Small Intestine	intestine
27	chr3:17757400-17781600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:17757400-17782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:17757600-17769400	Weak transcription	Esophagus	oesophagus
30	chr3:17757600-17780600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:17757600-17781000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:17757600-17781600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:17757600-17782200	Weak transcription	Spleen	Spleen
34	chr3:17757600-17782400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:17757600-17783200	Weak transcription	Ovary	ovary
36	chr3:17757800-17780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:17758000-17773000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:17759200-17782200	Weak transcription	HSMMtube	muscle
39	chr3:17759600-17780000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:17759800-17772000	Weak transcription	Fetal Heart	heart
41	chr3:17759800-17778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:17759800-17781600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:17761400-17767600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:17761800-17771800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr3:17762200-17783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:17762600-17782400	Weak transcription	Psoas Muscle	Psoas
47	chr3:17764200-17780200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:17764800-17782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:17765000-17777200	Weak transcription	Lung	lung
50	chr3:17765000-17782200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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