Variant report

Variant	rs6577622
Chromosome Location	chr3:17724339-17724340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17703859..17706608-chr3:17724124..17726176,2	K562	blood:
2	chr3:17721696..17724606-chr3:17732689..17735501,2	K562	blood:
3	chr3:17712945..17715676-chr3:17721430..17724365,2	K562	blood:

Variant related genes	Relation type
ENSG00000271841	Chromatin interaction
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs10510477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510478	0.96[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128836	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128838	0.96[CEU][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11128840	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128842	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128843	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128844	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11128848	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128849	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128850	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128852	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11708672	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11719266	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11719326	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11927637	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11927654	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11929111	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487248	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12487916	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488591	0.89[CEU][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs12490933	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12497320	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631291	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12632570	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634674	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12634893	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13061771	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069155	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071728	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071934	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076724	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13079096	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs13083917	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13096559	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13097908	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320647	0.96[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs13321297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17273111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2033379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2337387	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34002492	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34297417	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34485427	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34487714	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34990533	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35460334	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35642812	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697509	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172181	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4128509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243835	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243837	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4349529	0.85[EUR][1000 genomes]
rs4377510	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4408889	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4431138	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4435673	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4435674	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444738	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4470554	0.89[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482690	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488868	0.85[EUR][1000 genomes]
rs4513482	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566567	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566568	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568172	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589965	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4602424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611850	0.89[CEU][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs4637311	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4643736	0.84[EUR][1000 genomes]
rs4908938	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908939	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908940	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908958	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4908963	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908964	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908965	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908966	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908967	0.96[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908968	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908969	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908970	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908971	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908972	0.92[EUR][1000 genomes]
rs4908973	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908992	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4909009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909010	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014632	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701200	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56059241	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57309958	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61081795	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61236237	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577617	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577618	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577644	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768637	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779834	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780587	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6784025	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6788190	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6788763	0.81[EUR][1000 genomes]
rs6789467	0.84[EUR][1000 genomes]
rs6789697	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6792422	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795189	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796448	0.93[EUR][1000 genomes]
rs6797952	0.96[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803312	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804837	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6806610	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6807020	0.96[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6809062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427588	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431897	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7609916	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs7613953	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7617683	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622878	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627064	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7627732	0.96[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630695	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633601	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7647914	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647928	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650617	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7651998	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7652156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8179983	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310519	0.82[CEU][hapmap]
rs9310520	0.82[CEU][hapmap]
rs9310524	0.86[EUR][1000 genomes]
rs9310526	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9310528	0.96[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681617	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9681644	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9681893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9756494	0.96[CEU][hapmap]
rs9812199	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9812906	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs9815204	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9816920	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9821318	0.96[CEU][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs9821955	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823767	0.96[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9839588	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9847461	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847477	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9852861	0.81[EUR][1000 genomes]
rs9853571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9855515	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9857910	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860854	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9867064	0.94[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9880456	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880971	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881089	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881850	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9985472	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3528586	chr3:17719048-17726146	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3528589	chr3:17719498-17725996	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv963551	chr3:17719686-17724345	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3461527	chr3:17719922-17725113	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3528588	chr3:17719963-17725110	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3528587	chr3:17719970-17725106	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3461526	chr3:17719974-17725110	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3528590	chr3:17720002-17725075	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3528591	chr3:17720002-17725075	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv12509	chr3:17720059-17725015	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3461528	chr3:17720063-17725030	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17707000-17734800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:17709200-17732000	Weak transcription	Psoas Muscle	Psoas
3	chr3:17709600-17725800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:17712600-17732600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:17714400-17725200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:17714600-17724800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:17720000-17727600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:17720200-17734200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:17720600-17734400	Weak transcription	Dnd41	blood
12	chr3:17722600-17725600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:17723400-17724600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:17723400-17725200	Weak transcription	Small Intestine	intestine
15	chr3:17723400-17725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:17723400-17725400	Weak transcription	A549	lung
17	chr3:17723400-17735200	Weak transcription	Gastric	stomach
18	chr3:17723600-17724400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:17723600-17724800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:17723600-17728200	Weak transcription	Aorta	Aorta
21	chr3:17723600-17734400	Weak transcription	Primary B cells from cord blood	blood
22	chr3:17723600-17736000	Weak transcription	Pancreas	Pancrea
23	chr3:17723600-17736800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links