Variant report

Variant	rs13321297
Chromosome Location	chr3:17528764-17528765
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10212255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10510477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11713917	1.00[JPT][hapmap]
rs11720653	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12494513	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13065637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13085167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13095571	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13097908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13317478	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13318609	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13327810	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17043494	1.00[CHB][hapmap]
rs17043539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17043541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17273020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2060624	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283930	1.00[JPT][hapmap]
rs283935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283949	1.00[CHB][hapmap]
rs4243835	1.00[JPT][hapmap]
rs4243836	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4484221	1.00[CHB][hapmap]
rs4513482	1.00[JPT][hapmap]
rs4602424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5014632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6442681	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6442683	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577616	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6763681	1.00[CHB][hapmap]
rs6768637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6772394	1.00[CHB][hapmap]
rs67851870	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6787756	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6788763	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6792422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6795189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6799259	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6809062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7623979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7630286	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7630433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7632240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7644020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7644389	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7645756	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9810675	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9812199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9812906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9821955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9824191	1.00[CHB][hapmap]
rs9847461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9848610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9852861	1.00[ASN][1000 genomes]
rs9853571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9854201	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9870741	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9881850	1.00[CHB][hapmap]
rs9985472	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17476200-17530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17512000-17538000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:17516600-17537600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:17519600-17530200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:17520200-17537000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:17521000-17530200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:17521800-17535600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:17522600-17537200	Weak transcription	Fetal Kidney	kidney
9	chr3:17522800-17530800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:17522800-17535600	Weak transcription	Left Ventricle	heart
11	chr3:17522800-17535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:17522800-17541400	Weak transcription	Ovary	ovary
13	chr3:17523000-17530000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:17523000-17530000	Weak transcription	Thymus	Thymus
15	chr3:17523000-17530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:17523000-17530200	Weak transcription	Fetal Stomach	stomach
17	chr3:17523000-17530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:17523000-17530600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:17523000-17535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:17523000-17535600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17523000-17541400	Weak transcription	Pancreas	Pancrea
22	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
23	chr3:17523200-17535200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr3:17523200-17556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:17523400-17530000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:17524200-17530200	Weak transcription	Fetal Brain Female	brain
27	chr3:17527600-17529800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:17528400-17530800	Weak transcription	Primary B cells from cord blood	blood
29	chr3:17528600-17528800	Enhancers	A549	lung

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