Variant report

Variant	rs6772394
Chromosome Location	chr3:17488124-17488125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 273 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:258)

rs_ID	r²[population]
rs10212255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510475	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10865749	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128836	0.88[CEU][hapmap]
rs1120412	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11708391	0.87[EUR][1000 genomes]
rs11713917	0.96[CEU][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717644	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720653	1.00[ASN][1000 genomes]
rs12488093	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12488687	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12493567	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12494513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093375	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095571	1.00[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13317478	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13318609	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318886	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs13320647	0.88[CEU][hapmap]
rs13320693	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321297	1.00[CHB][hapmap]
rs13322641	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13327810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353435	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374197	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1375817	0.88[EUR][1000 genomes]
rs1375818	0.87[EUR][1000 genomes]
rs1446303	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1449879	0.88[EUR][1000 genomes]
rs1449881	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449882	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1449886	0.88[EUR][1000 genomes]
rs1463218	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470667	0.81[EUR][1000 genomes]
rs1545424	0.88[EUR][1000 genomes]
rs17043422	0.96[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043492	0.96[CEU][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043494	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200818	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17200839	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17273020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1867772	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs187303	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2028874	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2060623	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060624	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060625	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2060627	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2060628	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060629	0.88[EUR][1000 genomes]
rs2084572	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121262	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2122368	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167118	0.88[EUR][1000 genomes]
rs2167119	0.87[EUR][1000 genomes]
rs2247106	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252237	0.88[EUR][1000 genomes]
rs2348003	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348004	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2348005	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2470347	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2470349	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2470577	0.90[EUR][1000 genomes]
rs2470578	0.81[EUR][1000 genomes]
rs2470580	0.96[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2470583	0.88[EUR][1000 genomes]
rs2592099	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs2596636	0.89[EUR][1000 genomes]
rs2596637	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596638	0.89[EUR][1000 genomes]
rs2596639	0.89[EUR][1000 genomes]
rs2596640	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2596641	0.81[EUR][1000 genomes]
rs2596643	0.92[CEU][hapmap]
rs2596645	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2596647	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596648	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2596649	0.81[EUR][1000 genomes]
rs2596650	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2596652	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2596666	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596667	0.88[EUR][1000 genomes]
rs2596669	0.88[EUR][1000 genomes]
rs2596670	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596671	0.88[EUR][1000 genomes]
rs2596672	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596673	0.87[EUR][1000 genomes]
rs2596674	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2596675	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2596677	0.90[EUR][1000 genomes]
rs2596678	0.96[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs2596679	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2596680	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2596681	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733478	0.91[EUR][1000 genomes]
rs2733479	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2733481	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733485	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733487	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2733489	0.81[EUR][1000 genomes]
rs2733491	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2733492	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2733493	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733494	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733495	0.88[CEU][hapmap]
rs2733496	0.80[EUR][1000 genomes]
rs2733497	0.88[EUR][1000 genomes]
rs2733498	0.88[EUR][1000 genomes]
rs2733499	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733500	0.88[EUR][1000 genomes]
rs2733501	0.88[EUR][1000 genomes]
rs2733502	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733504	0.83[EUR][1000 genomes]
rs2733507	0.86[EUR][1000 genomes]
rs2733508	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733509	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733510	0.87[EUR][1000 genomes]
rs2733514	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733515	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2733517	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2733523	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2733524	0.91[EUR][1000 genomes]
rs283906	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283908	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283909	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283911	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283912	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283913	0.91[EUR][1000 genomes]
rs283914	0.81[EUR][1000 genomes]
rs283915	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283916	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs283917	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs283918	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs283919	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs283921	0.92[EUR][1000 genomes]
rs283922	0.91[EUR][1000 genomes]
rs283923	0.91[EUR][1000 genomes]
rs283925	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs283926	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs283927	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283928	0.85[EUR][1000 genomes]
rs283929	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs283930	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs283931	0.96[CEU][hapmap];0.84[YRI][hapmap];0.94[EUR][1000 genomes]
rs283934	0.87[EUR][1000 genomes]
rs283935	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283936	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs283937	0.90[EUR][1000 genomes]
rs283938	0.93[EUR][1000 genomes]
rs283939	1.00[ASN][1000 genomes]
rs283940	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs283941	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs283942	0.84[EUR][1000 genomes]
rs283943	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs283944	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283945	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs283946	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs283947	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs283948	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs283949	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408438	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28454413	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34502358	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892692	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35126965	0.90[EUR][1000 genomes]
rs35234876	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35521582	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4312642	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4377510	0.89[CEU][hapmap]
rs4470554	0.88[CEU][hapmap]
rs4582042	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4615062	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4637311	0.87[CEU][hapmap]
rs58307801	0.87[EUR][1000 genomes]
rs62245860	0.86[EUR][1000 genomes]
rs62245914	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62245947	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6442679	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6442680	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6442681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442682	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6442683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6762516	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6763593	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6763681	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs67851870	1.00[ASN][1000 genomes]
rs6785870	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6787756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788763	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6792443	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6799259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801690	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6802891	0.81[EUR][1000 genomes]
rs728022	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7614318	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7623979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625175	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7625855	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7630286	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630433	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632989	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636787	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7642719	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7644020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7645756	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647905	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7648883	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651278	0.95[CEU][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652792	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs767685	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9310523	1.00[ASN][1000 genomes]
rs9310526	0.88[CEU][hapmap]
rs9310528	0.88[CEU][hapmap]
rs9681644	0.88[CEU][hapmap]
rs9756494	0.88[CEU][hapmap]
rs9810675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812199	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9813532	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9815204	0.92[CEU][hapmap]
rs9817290	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9820703	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9821318	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs9821955	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9823064	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9823767	0.88[CEU][hapmap]
rs9824191	1.00[CHB][hapmap]
rs9824952	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9830240	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs9835988	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9839588	0.89[CEU][hapmap]
rs9843640	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9847461	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9847477	0.89[CEU][hapmap]
rs9848610	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848766	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9850127	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9851518	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9852861	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9853571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9854201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855515	1.00[CHB][hapmap]
rs9861749	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9864494	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9870741	1.00[ASN][1000 genomes]
rs9874826	0.83[EUR][1000 genomes]
rs9878954	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9880971	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9881089	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9881850	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882273	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9883518	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17448000-17506600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17462400-17521400	Weak transcription	Pancreas	Pancrea
3	chr3:17472400-17522000	Weak transcription	Fetal Lung	lung
4	chr3:17472800-17503200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:17473800-17509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:17476000-17497200	Weak transcription	Psoas Muscle	Psoas
7	chr3:17476200-17530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:17477000-17491200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:17477400-17497200	Weak transcription	Dnd41	blood
10	chr3:17477600-17521600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:17480400-17521200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:17480800-17490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:17480800-17499200	Weak transcription	Primary B cells from cord blood	blood
14	chr3:17480800-17504200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:17483000-17502400	Weak transcription	Primary T cells from cord blood	blood
16	chr3:17484200-17490800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:17484200-17499800	Weak transcription	Fetal Intestine Large	intestine
18	chr3:17487800-17489400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links