Variant report

Variant	rs9847477
Chromosome Location	chr3:17607991-17607992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17599124..17601817-chr3:17607605..17609394,2	K562	blood:

Extended variants
information (count: 283 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:278)

rs_ID	r²[population]
rs10212255	0.90[CEU][hapmap]
rs10433560	0.81[EUR][1000 genomes]
rs10433561	0.85[EUR][1000 genomes]
rs10510475	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10510477	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10510478	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10865749	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128829	0.82[CHB][hapmap]
rs11128830	0.82[CHB][hapmap]
rs11128833	0.82[CHB][hapmap]
rs11128836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128837	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11128838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128839	1.00[CEU][hapmap]
rs11128840	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11128841	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11128842	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128844	0.82[EUR][1000 genomes]
rs11128848	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11128849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128852	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1120412	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708391	1.00[ASN][1000 genomes]
rs11708672	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11719266	0.84[EUR][1000 genomes]
rs11719326	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11914537	0.82[CHB][hapmap]
rs11914797	0.82[CHB][hapmap]
rs11915560	0.82[CHB][hapmap]
rs11918295	0.82[CHB][hapmap]
rs11920751	0.82[CHB][hapmap]
rs11922534	0.82[CHB][hapmap]
rs11923589	0.82[CHB][hapmap]
rs11923635	0.82[CHB][hapmap]
rs11924970	0.82[CHB][hapmap]
rs11927637	0.83[EUR][1000 genomes]
rs11927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11929111	0.84[EUR][1000 genomes]
rs11929394	0.82[CHB][hapmap]
rs12106762	0.82[CHB][hapmap]
rs12106770	0.82[CHB][hapmap]
rs12106899	0.82[CHB][hapmap]
rs12106900	0.82[CHB][hapmap]
rs12185952	0.82[CHB][hapmap]
rs12487248	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12487916	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12488591	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12488687	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490933	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12493567	0.93[CEU][hapmap]
rs12494513	0.90[CEU][hapmap]
rs12497320	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12631291	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12632570	0.84[EUR][1000 genomes]
rs12634674	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12634893	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13065637	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13069155	0.91[EUR][1000 genomes]
rs13071728	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13071934	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13076724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13079096	0.93[CEU][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes]
rs13083917	0.93[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13085167	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13095571	0.80[AMR][1000 genomes]
rs13096559	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13097908	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13318886	1.00[ASN][1000 genomes]
rs13320647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13327810	0.89[CEU][hapmap]
rs1446303	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596863	0.82[CHB][hapmap]
rs17043539	0.89[CEU][hapmap]
rs17043541	0.88[CEU][hapmap]
rs17043556	0.82[CHB][hapmap]
rs17043558	0.82[CHB][hapmap]
rs17043565	0.82[CHB][hapmap]
rs17043568	0.82[CHB][hapmap]
rs17043571	0.82[CHB][hapmap]
rs17043574	0.82[CHB][hapmap]
rs17043578	0.82[CHB][hapmap]
rs17043579	0.82[CHB][hapmap]
rs17043623	0.82[CHB][hapmap]
rs17043631	0.82[CHB][hapmap]
rs17043643	0.82[CHB][hapmap]
rs17043652	0.82[CHB][hapmap]
rs17200818	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17200839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1867772	1.00[ASN][1000 genomes]
rs2028874	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2121262	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348363	0.89[ASN][1000 genomes]
rs34002492	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34297417	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34485427	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34487714	0.84[EUR][1000 genomes]
rs34786175	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34990533	0.81[EUR][1000 genomes]
rs35460334	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35521582	0.85[ASN][1000 genomes]
rs35642812	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35697509	0.84[EUR][1000 genomes]
rs36172181	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4128509	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243835	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243836	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243837	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243838	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4312642	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs4349529	0.91[EUR][1000 genomes]
rs4377510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4408889	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4431138	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4435673	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4435674	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs4444738	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4470554	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4482690	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4484221	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4488868	0.89[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4566567	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4566568	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4568172	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4582042	0.89[CEU][hapmap]
rs4589965	0.84[EUR][1000 genomes]
rs4602424	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4611850	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs4627740	0.82[CHB][hapmap]
rs4637311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4643736	0.90[EUR][1000 genomes]
rs4908938	0.94[EUR][1000 genomes]
rs4908939	0.85[CEU][hapmap]
rs4908940	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4908958	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4908963	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4908964	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4908965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908966	0.84[EUR][1000 genomes]
rs4908967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908968	0.93[EUR][1000 genomes]
rs4908969	0.84[EUR][1000 genomes]
rs4908970	0.94[EUR][1000 genomes]
rs4908971	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes]
rs4908972	0.81[EUR][1000 genomes]
rs4908973	0.81[EUR][1000 genomes]
rs4908987	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4908992	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4909009	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4909010	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4909012	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5014632	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55701200	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56059241	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57309958	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61081795	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61236237	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62245947	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6442680	0.89[CEU][hapmap]
rs6442681	0.90[CEU][hapmap]
rs6442682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442683	0.90[CEU][hapmap]
rs6577616	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577617	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577618	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577619	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577622	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577643	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6577644	0.84[EUR][1000 genomes]
rs6763681	0.93[CEU][hapmap]
rs6768637	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6772394	0.89[CEU][hapmap]
rs6779834	0.82[EUR][1000 genomes]
rs6780587	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6784025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6787756	0.89[CEU][hapmap]
rs6788957	0.82[CHB][hapmap]
rs6789467	0.91[EUR][1000 genomes]
rs6789697	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6792422	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6792443	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792589	1.00[JPT][hapmap]
rs6792747	0.82[CHB][hapmap]
rs6795189	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6796448	0.81[EUR][1000 genomes]
rs6797952	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6799259	0.89[CEU][hapmap]
rs6801690	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6803312	0.83[EUR][1000 genomes]
rs6803999	0.82[CHB][hapmap]
rs6804837	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6806610	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6807020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6809062	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6810235	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7427235	0.82[CHB][hapmap]
rs7427588	0.85[CEU][hapmap]
rs7431897	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7432241	0.82[CHB][hapmap]
rs7609916	0.86[CEU][hapmap]
rs7613953	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7614318	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7617683	0.96[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7618836	0.82[CHB][hapmap]
rs7619879	0.82[CHB][hapmap]
rs7625175	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625855	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627064	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7627732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes]
rs7630695	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7632240	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7633601	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7636787	0.90[CEU][hapmap]
rs7644020	0.89[CEU][hapmap]
rs7644389	0.89[CEU][hapmap]
rs7645459	0.82[EUR][1000 genomes]
rs7647905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7647914	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7647928	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7650295	0.82[CHB][hapmap]
rs7650617	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651278	0.85[CEU][hapmap]
rs7651998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7652156	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7652792	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8179983	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs9310516	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9310519	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9310520	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310524	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9681232	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9681617	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681644	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9681893	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9756494	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810675	0.90[CEU][hapmap]
rs9812199	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9812906	0.89[CEU][hapmap]
rs9813532	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815204	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816920	0.83[EUR][1000 genomes]
rs9817290	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9820703	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9821318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821955	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9823064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835988	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9843640	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847461	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9848610	0.85[CEU][hapmap]
rs9848766	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs9851302	0.82[CHB][hapmap]
rs9851518	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853571	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9854201	0.90[CEU][hapmap]
rs9857910	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9860854	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9861749	0.81[CEU][hapmap]
rs9864494	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867064	0.82[EUR][1000 genomes]
rs9874826	0.89[ASN][1000 genomes]
rs9875973	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878954	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9880456	0.84[EUR][1000 genomes]
rs9880971	0.88[EUR][1000 genomes]
rs9881089	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9881850	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9882273	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17575000-17613400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:17580000-17619400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:17584000-17613200	Weak transcription	GM12878-XiMat	blood
4	chr3:17584200-17608600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:17587000-17613600	Weak transcription	Primary B cells from cord blood	blood
6	chr3:17596000-17619600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:17600400-17610400	Weak transcription	A549	lung
8	chr3:17607400-17608600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:17607400-17608800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:17607600-17608000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:17607600-17608600	Enhancers	Primary T cells from cord blood	blood
12	chr3:17607600-17609000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:17607800-17608400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links