Variant report

Variant	rs4909010
Chromosome Location	chr3:17736023-17736024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17729826..17731656-chr3:17733369..17736169,3	MCF-7	breast:
2	chr3:17472331..17474427-chr3:17733760..17736029,2	MCF-7	breast:

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10510477	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510478	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128836	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128837	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128838	0.90[EUR][1000 genomes]
rs11128839	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11128840	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128841	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128842	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128843	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128844	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11128848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128849	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128850	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128852	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11708672	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11719266	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11719326	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11927637	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11927654	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11929111	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487248	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12487916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488591	0.93[EUR][1000 genomes]
rs12490933	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12497320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631291	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12632570	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634674	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12634893	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13061771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069155	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071728	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076724	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13079096	0.84[EUR][1000 genomes]
rs13083917	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095571	0.83[EUR][1000 genomes]
rs13096559	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13097908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002492	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34297417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34485427	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34487714	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786175	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34990533	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35460334	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35642812	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697509	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172181	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4128509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243835	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243837	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.87[EUR][1000 genomes]
rs4349529	0.85[EUR][1000 genomes]
rs4377510	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4408889	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4431138	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4435673	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4435674	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444738	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4470554	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482690	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484221	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488868	0.85[EUR][1000 genomes]
rs4513482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566568	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568172	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589965	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4602424	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611850	0.84[EUR][1000 genomes]
rs4637311	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4643736	0.84[EUR][1000 genomes]
rs4908938	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908939	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908940	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4908963	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908965	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908966	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908967	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908968	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908969	0.97[EUR][1000 genomes]
rs4908970	0.87[EUR][1000 genomes]
rs4908971	0.87[EUR][1000 genomes]
rs4908972	0.92[EUR][1000 genomes]
rs4908973	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908987	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908992	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4909009	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014632	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701200	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56059241	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57309958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61081795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61236237	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577618	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577619	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577622	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577643	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577644	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768637	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779834	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780587	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6784025	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6788190	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6788763	0.81[EUR][1000 genomes]
rs6789467	0.84[EUR][1000 genomes]
rs6789697	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6792422	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795189	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796448	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6797952	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803312	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804837	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6806610	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6807020	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6809062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427588	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7609916	0.87[EUR][1000 genomes]
rs7613953	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7617683	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622878	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627064	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7627732	0.87[EUR][1000 genomes]
rs7630695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633601	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647914	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647928	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650617	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7651998	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7652156	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8179983	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310524	0.86[EUR][1000 genomes]
rs9310526	0.85[EUR][1000 genomes]
rs9310528	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681617	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9681644	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9681893	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9812199	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9815204	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9816920	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9821955	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823767	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9839588	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9847461	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847477	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9852861	0.81[EUR][1000 genomes]
rs9853571	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9857910	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860854	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9867064	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9869999	1.00[ASN][1000 genomes]
rs9880456	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880971	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881089	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881850	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9985472	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:17723600-17736800	Weak transcription	Ovary	ovary
4	chr3:17726800-17742200	Weak transcription	Stomach Mucosa	stomach
5	chr3:17731600-17755600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:17732200-17749400	Weak transcription	NHEK	skin
7	chr3:17732600-17755400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:17733200-17755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:17733400-17736400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:17733400-17747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:17733800-17736200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:17734800-17753200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:17735200-17737000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:17735200-17747600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:17735200-17755600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:17735200-17755800	Weak transcription	Lung	lung
17	chr3:17735400-17750800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:17735400-17754200	Weak transcription	Primary B cells from cord blood	blood
19	chr3:17735400-17755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:17735400-17755600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:17735400-17755800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:17736000-17745000	Weak transcription	HepG2	liver
23	chr3:17736000-17747600	Weak transcription	Dnd41	blood

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