Variant report

Variant	rs6809775
Chromosome Location	chr3:17802881-17802882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17802819..17806567-chr3:17807194..17809749,3	K562	blood:

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10433560	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10433561	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10510477	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510478	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs11128836	0.84[CEU][hapmap]
rs11128837	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128838	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs11128839	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128840	0.80[EUR][1000 genomes]
rs11128841	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128843	0.82[EUR][1000 genomes]
rs11128844	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11128848	0.89[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128849	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11128850	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11128852	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs11719266	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11719326	0.82[EUR][1000 genomes]
rs11927637	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11927654	0.85[CEU][hapmap]
rs11929111	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487248	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs12487916	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488591	1.00[CEU][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12497320	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631291	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12632570	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634674	0.87[EUR][1000 genomes]
rs13061771	0.88[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065637	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071728	0.87[EUR][1000 genomes]
rs13071934	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076724	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs13079096	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13083917	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs13085167	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096559	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs13097908	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2033379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2337387	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34297417	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34485427	0.87[EUR][1000 genomes]
rs34487714	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786175	0.85[EUR][1000 genomes]
rs34990533	0.86[EUR][1000 genomes]
rs35642812	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697509	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128509	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243835	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243836	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243838	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4349529	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4377510	0.85[CEU][hapmap]
rs4431138	0.88[EUR][1000 genomes]
rs4435674	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444738	0.88[EUR][1000 genomes]
rs4470554	0.89[ASW][hapmap];0.85[CEU][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482690	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484221	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513482	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566567	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568172	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589965	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4602424	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611850	0.93[CEU][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4637311	0.82[CEU][hapmap]
rs4643736	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908938	0.82[EUR][1000 genomes]
rs4908939	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908958	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs4908963	0.88[EUR][1000 genomes]
rs4908964	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908965	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs4908966	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908967	0.85[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs4908968	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4908969	0.88[EUR][1000 genomes]
rs4908970	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4908971	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4908972	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4908973	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908987	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908992	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4909009	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909010	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909012	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014632	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701200	0.87[EUR][1000 genomes]
rs57309958	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61081795	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577616	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577617	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577619	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577622	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577643	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577644	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768637	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779834	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784025	0.82[CEU][hapmap]
rs6788190	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6789467	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6789697	0.89[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs6792422	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795189	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796448	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6797952	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803312	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6804837	0.90[EUR][1000 genomes]
rs6807020	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs6809062	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810235	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427588	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431897	0.86[EUR][1000 genomes]
rs7609916	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7617683	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs7622878	0.83[EUR][1000 genomes]
rs7627732	0.85[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7630695	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632240	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633601	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642860	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7645459	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7647914	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647928	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651998	0.85[CEU][hapmap]
rs7652156	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	0.85[CEU][hapmap]
rs8179983	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310526	0.84[CEU][hapmap]
rs9310528	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs9681232	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681617	0.86[EUR][1000 genomes]
rs9681644	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9681893	0.88[EUR][1000 genomes]
rs9815204	0.88[CEU][hapmap]
rs9816920	0.85[EUR][1000 genomes]
rs9821955	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9823767	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs9839588	0.85[CEU][hapmap]
rs9847461	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9847477	0.85[CEU][hapmap]
rs9853571	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs9855515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857910	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867064	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9880456	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880971	0.84[EUR][1000 genomes]
rs9881089	0.84[EUR][1000 genomes]
rs9985472	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17801800-17804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:17802000-17804600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:17802800-17803000	Enhancers	Brain Inferior Temporal Lobe	brain

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