Variant report

Variant	rs4908987
Chromosome Location	chr3:17688490-17688491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SATB1-8	chr3:17688453-17688548	NONHSAT088556
2	lnc-SATB1-8	chr3:17688453-17688548	NONHSAT088552

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10510477	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510478	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128836	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128837	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128838	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11128840	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128842	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11128843	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128844	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11128848	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128849	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128850	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128852	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs11708672	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11719266	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11719326	0.87[EUR][1000 genomes]
rs11927637	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11927654	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11929111	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487248	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12487916	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488591	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs12490933	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12497320	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631291	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12632570	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634674	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12634893	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065637	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069155	0.86[EUR][1000 genomes]
rs13071728	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076724	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13079096	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs13083917	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085167	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13096559	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13097908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320647	0.92[CEU][hapmap]
rs13321297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17273111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2033379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2337387	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34002492	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34297417	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34485427	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34487714	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786175	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34990533	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35460334	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35642812	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697509	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172181	0.90[EUR][1000 genomes]
rs4128509	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243835	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243836	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243837	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243838	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs4349529	0.85[EUR][1000 genomes]
rs4377510	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4408889	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4431138	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4435673	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4435674	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444738	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4470554	0.92[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484221	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488868	0.85[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566568	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568172	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589965	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4602424	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611850	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4637311	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4643736	0.84[EUR][1000 genomes]
rs4908938	0.87[EUR][1000 genomes]
rs4908939	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908940	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908958	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4908963	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4908964	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908965	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4908966	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908967	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4908968	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908969	0.97[EUR][1000 genomes]
rs4908970	0.87[EUR][1000 genomes]
rs4908971	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs4908972	0.92[EUR][1000 genomes]
rs4908973	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908992	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4909009	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909010	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909012	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701200	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56059241	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57309958	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61081795	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61236237	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577617	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577618	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577619	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577622	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577643	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577644	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768637	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779834	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780587	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6784025	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6788190	0.88[EUR][1000 genomes]
rs6788763	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6789467	0.84[EUR][1000 genomes]
rs6789697	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6792422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796448	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6797952	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803312	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804837	0.96[EUR][1000 genomes]
rs6806610	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6807020	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6809062	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810235	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427588	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431897	0.94[EUR][1000 genomes]
rs7609916	0.93[CEU][hapmap];0.97[YRI][hapmap];0.87[EUR][1000 genomes]
rs7613953	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7617683	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622878	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627064	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7627732	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7630695	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632240	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633601	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7644389	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7647914	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647928	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650617	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7651998	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7652156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8179983	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310520	0.80[CEU][hapmap]
rs9310524	0.86[EUR][1000 genomes]
rs9310526	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs9310528	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9681232	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681617	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9681644	0.89[CEU][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9681893	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9756494	0.93[CEU][hapmap]
rs9812199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9812906	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs9815204	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9816920	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9821318	0.92[CEU][hapmap]
rs9821955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823064	0.89[CEU][hapmap]
rs9823767	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9839588	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9847461	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847477	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9852861	0.81[EUR][1000 genomes]
rs9853571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9855515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860854	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9867064	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9878954	0.89[CEU][hapmap]
rs9880456	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880971	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881089	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881850	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9985472	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17681400-17689800	Weak transcription	Primary T cells from cord blood	blood
6	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:17687000-17689000	Weak transcription	Psoas Muscle	Psoas
8	chr3:17687200-17694200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:17687400-17694200	Weak transcription	A549	lung
10	chr3:17687600-17693400	Weak transcription	Brain Substantia Nigra	brain

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