Variant report

Variant	rs9821318
Chromosome Location	chr3:17567220-17567221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17559404..17562801-chr3:17567109..17569142,3	K562	blood:

Extended variants
information (count: 290 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:277)

rs_ID	r²[population]
rs10212255	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10510474	0.85[CHD][hapmap]
rs10510475	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510477	0.96[CEU][hapmap]
rs10510478	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10865749	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128829	0.85[CHB][hapmap]
rs11128830	0.85[CHB][hapmap]
rs11128833	0.85[CHB][hapmap]
rs11128836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128837	0.96[CEU][hapmap];0.80[AMR][1000 genomes]
rs11128838	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs11128839	1.00[CEU][hapmap]
rs11128840	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11128841	0.96[CEU][hapmap]
rs11128842	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128848	0.96[CEU][hapmap]
rs11128849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs11128852	0.87[EUR][1000 genomes]
rs1120412	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708391	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708672	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11713917	0.84[CEU][hapmap]
rs11717644	0.80[EUR][1000 genomes]
rs11719326	0.85[EUR][1000 genomes]
rs11914537	0.85[CHB][hapmap]
rs11914797	0.82[CHB][hapmap]
rs11915560	0.85[CHB][hapmap]
rs11916205	0.85[CHD][hapmap]
rs11918295	0.85[CHB][hapmap]
rs11920557	0.82[CHB][hapmap]
rs11920751	0.85[CHB][hapmap]
rs11921357	0.85[CHD][hapmap]
rs11922177	0.85[CHD][hapmap]
rs11922534	0.85[CHB][hapmap]
rs11923589	0.85[CHB][hapmap]
rs11923635	0.85[CHB][hapmap]
rs11924970	0.85[CHB][hapmap]
rs11927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11929394	0.85[CHB][hapmap]
rs12106762	0.85[CHB][hapmap]
rs12106770	0.85[CHB][hapmap]
rs12106899	0.85[CHB][hapmap]
rs12106900	0.85[CHB][hapmap]
rs12185952	0.85[CHB][hapmap]
rs12487248	0.96[CEU][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes]
rs12488093	0.85[CEU][hapmap]
rs12488687	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490933	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12493567	0.92[CEU][hapmap]
rs12494513	0.89[CEU][hapmap]
rs12497320	0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs12631291	0.96[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs12634674	0.85[AMR][1000 genomes]
rs12634893	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13061771	0.96[CEU][hapmap]
rs13065637	0.96[CEU][hapmap]
rs13069155	0.85[EUR][1000 genomes]
rs13071728	0.80[AMR][1000 genomes]
rs13076724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13079096	0.82[EUR][1000 genomes]
rs13083917	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs13085167	0.96[CEU][hapmap]
rs13095571	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13096559	0.96[CEU][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes]
rs13097908	0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs13318609	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs13318886	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320647	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320693	0.80[EUR][1000 genomes]
rs13327810	0.89[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs1374197	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1446301	0.82[CHB][hapmap]
rs1446303	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596863	0.85[CHB][hapmap]
rs17029249	0.85[CHD][hapmap]
rs17043422	0.85[CEU][hapmap]
rs17043425	0.85[CHD][hapmap]
rs17043467	0.85[CHD][hapmap]
rs17043486	0.85[CHD][hapmap]
rs17043492	0.92[CEU][hapmap]
rs17043494	0.84[CEU][hapmap]
rs17043539	0.89[CEU][hapmap]
rs17043541	0.88[CEU][hapmap]
rs17043556	0.85[CHB][hapmap]
rs17043558	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043565	0.85[CHB][hapmap]
rs17043568	0.85[CHB][hapmap]
rs17043571	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043574	0.85[CHB][hapmap]
rs17043578	0.85[CHB][hapmap]
rs17043579	0.85[CHB][hapmap]
rs17043589	0.85[CHD][hapmap]
rs17043623	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043631	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17043638	0.85[YRI][hapmap]
rs17043643	0.85[CHB][hapmap]
rs17043652	0.85[CHB][hapmap]
rs17200818	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273020	0.82[MEX][hapmap]
rs1867772	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028874	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121262	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348363	0.89[ASN][1000 genomes]
rs2470580	0.83[CEU][hapmap]
rs2592099	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs283929	0.83[EUR][1000 genomes]
rs283930	0.83[EUR][1000 genomes]
rs283935	0.85[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs283936	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs283940	0.82[EUR][1000 genomes]
rs283942	0.82[EUR][1000 genomes]
rs283945	0.82[EUR][1000 genomes]
rs2881803	0.85[CHD][hapmap]
rs34002492	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34485427	0.88[AMR][1000 genomes]
rs34786175	0.82[AMR][1000 genomes]
rs34892692	0.81[EUR][1000 genomes]
rs35234876	0.81[AMR][1000 genomes]
rs35460334	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35521582	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36172181	0.86[EUR][1000 genomes]
rs4128509	0.96[CEU][hapmap]
rs4243835	0.96[CEU][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs4243836	0.96[CEU][hapmap]
rs4243837	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243838	0.96[CEU][hapmap]
rs4312642	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.85[EUR][1000 genomes]
rs4349529	0.83[EUR][1000 genomes]
rs4377510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4408889	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4431138	0.85[AMR][1000 genomes]
rs4435673	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4470554	0.85[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs4482690	0.92[CEU][hapmap]
rs4484221	0.96[CEU][hapmap];0.80[AMR][1000 genomes]
rs4488868	0.83[EUR][1000 genomes]
rs4513482	0.96[CEU][hapmap]
rs4566567	0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs4568172	0.85[CEU][hapmap]
rs4582042	0.88[CEU][hapmap]
rs4602424	0.96[CEU][hapmap]
rs4611850	0.82[EUR][1000 genomes]
rs4627740	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs4637311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4643736	0.82[EUR][1000 genomes]
rs4908938	0.85[EUR][1000 genomes]
rs4908958	0.96[CEU][hapmap]
rs4908963	0.85[YRI][hapmap];0.85[AMR][1000 genomes]
rs4908965	0.87[EUR][1000 genomes]
rs4908967	0.87[EUR][1000 genomes]
rs4908968	0.87[EUR][1000 genomes]
rs4908970	0.85[EUR][1000 genomes]
rs4908971	0.85[EUR][1000 genomes]
rs4908987	0.92[CEU][hapmap]
rs4908992	0.96[CEU][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes]
rs4909012	0.96[CEU][hapmap]
rs5014632	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs55701200	0.88[AMR][1000 genomes]
rs56059241	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61236237	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62245947	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6442679	0.85[CEU][hapmap]
rs6442680	0.88[CEU][hapmap]
rs6442681	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6442682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442683	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6577616	0.96[CEU][hapmap]
rs6577618	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6577619	0.96[CEU][hapmap]
rs6577622	0.96[CEU][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs6577643	0.96[CEU][hapmap]
rs6762516	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6763593	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6763681	0.92[CEU][hapmap]
rs6768637	0.96[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes]
rs6772394	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6780587	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6784025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6787756	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6788763	0.81[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6788957	0.85[CHB][hapmap]
rs6789467	0.82[EUR][1000 genomes]
rs6789697	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes]
rs6792422	0.92[CEU][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs6792443	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792589	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6792747	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs6795189	0.92[CEU][hapmap]
rs6797952	0.92[CEU][hapmap]
rs6799259	0.88[CEU][hapmap]
rs6801690	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803999	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs6806610	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6807020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6809062	0.96[CEU][hapmap]
rs6810235	0.96[CEU][hapmap]
rs7427235	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7432241	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7613953	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7614318	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7617683	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7618836	0.85[CHB][hapmap]
rs7619879	0.85[CHB][hapmap]
rs7623979	0.89[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs7625175	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625855	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627064	0.83[EUR][1000 genomes]
rs7627732	0.85[EUR][1000 genomes]
rs7630286	0.84[CEU][hapmap]
rs7630433	0.85[CEU][hapmap]
rs7632240	0.96[CEU][hapmap]
rs7632989	0.80[EUR][1000 genomes]
rs7636787	0.89[CEU][hapmap]
rs7644020	0.89[CEU][hapmap];0.93[TSI][hapmap]
rs7644389	0.89[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs7645756	0.85[CEU][hapmap]
rs7647905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650295	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7650617	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7651278	0.84[CEU][hapmap]
rs7651998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7652792	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8179983	0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs9310516	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310519	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310520	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310524	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9681232	0.96[CEU][hapmap]
rs9681644	0.82[CEU][hapmap]
rs9681893	0.85[AMR][1000 genomes]
rs9756494	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810675	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs9812199	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9812906	0.89[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9813532	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815204	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817290	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9820703	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821955	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs9823064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823767	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830240	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9835988	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9843640	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847461	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs9847477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848610	0.85[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs9848766	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850127	0.92[CEU][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9851302	0.85[CHB][hapmap]
rs9851518	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852861	0.81[EUR][1000 genomes]
rs9853571	0.92[CEU][hapmap]
rs9854201	0.89[CEU][hapmap]
rs9855515	0.94[MEX][hapmap]
rs9857910	0.92[CEU][hapmap]
rs9860854	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9861749	0.80[CEU][hapmap]
rs9864494	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9874826	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9875973	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876715	0.82[CHB][hapmap]
rs9878954	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9881089	0.80[AMR][1000 genomes]
rs9881850	0.88[CEU][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9882273	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883518	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9821318	LSM3	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
2	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17536400-17568800	Weak transcription	GM12878-XiMat	blood
4	chr3:17536400-17574800	Weak transcription	Dnd41	blood
5	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
6	chr3:17548600-17579200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:17550000-17583800	Weak transcription	Primary B cells from cord blood	blood
8	chr3:17550200-17574800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:17557600-17597200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:17560600-17568800	Weak transcription	Ovary	ovary
11	chr3:17560600-17579800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:17561000-17599000	Weak transcription	Pancreas	Pancrea
13	chr3:17562000-17586800	Weak transcription	A549	lung
14	chr3:17563200-17593400	Weak transcription	Aorta	Aorta
15	chr3:17564800-17568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:17567200-17568800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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