Variant report

Variant	rs9875973
Chromosome Location	chr3:17584573-17584574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10510475	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510478	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10865749	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128836	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128838	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128840	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11128842	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128849	0.88[EUR][1000 genomes]
rs11128850	0.88[EUR][1000 genomes]
rs11128852	0.88[EUR][1000 genomes]
rs1120412	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708391	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708672	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719326	0.86[EUR][1000 genomes]
rs11927654	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12487248	0.86[AMR][1000 genomes]
rs12488687	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490933	0.86[EUR][1000 genomes]
rs12631291	0.84[AMR][1000 genomes]
rs12634674	0.84[AMR][1000 genomes]
rs12634893	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13069155	0.86[EUR][1000 genomes]
rs13076724	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13079096	0.83[EUR][1000 genomes]
rs13083917	0.84[AMR][1000 genomes]
rs13095571	0.83[AMR][1000 genomes]
rs13096559	0.86[AMR][1000 genomes]
rs13318886	0.93[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320647	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446303	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200818	0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200839	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867772	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028874	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121262	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348363	0.89[ASN][1000 genomes]
rs283936	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34002492	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34485427	0.86[AMR][1000 genomes]
rs34786175	0.81[AMR][1000 genomes]
rs35234876	0.80[AMR][1000 genomes]
rs35460334	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35521582	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs36172181	0.87[EUR][1000 genomes]
rs4243837	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4312642	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	0.86[EUR][1000 genomes]
rs4349529	0.84[EUR][1000 genomes]
rs4377510	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4408889	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4431138	0.84[AMR][1000 genomes]
rs4435673	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4488868	0.84[EUR][1000 genomes]
rs4611850	0.83[EUR][1000 genomes]
rs4637311	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4643736	0.83[EUR][1000 genomes]
rs4908938	0.86[EUR][1000 genomes]
rs4908963	0.84[AMR][1000 genomes]
rs4908965	0.88[EUR][1000 genomes]
rs4908967	0.88[EUR][1000 genomes]
rs4908968	0.88[EUR][1000 genomes]
rs4908970	0.86[EUR][1000 genomes]
rs4908971	0.86[EUR][1000 genomes]
rs4908992	0.86[AMR][1000 genomes]
rs55701200	0.86[AMR][1000 genomes]
rs56059241	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61236237	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62245947	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6442682	0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577618	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6762516	0.80[EUR][1000 genomes]
rs6763593	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6780587	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6784025	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6789467	0.83[EUR][1000 genomes]
rs6789697	0.83[AMR][1000 genomes]
rs6792443	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801690	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806610	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6807020	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7613953	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7614318	0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7617683	0.84[AMR][1000 genomes]
rs7625175	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625855	0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627064	0.84[EUR][1000 genomes]
rs7627732	0.86[EUR][1000 genomes]
rs7647905	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650617	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7651998	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7652792	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179891	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9310516	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310519	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310520	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310524	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310526	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310528	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9681893	0.84[AMR][1000 genomes]
rs9756494	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757339	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812199	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9812906	0.81[AMR][1000 genomes]
rs9813532	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815204	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817290	0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9820703	0.86[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821318	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821955	0.81[EUR][1000 genomes]
rs9823064	0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823767	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824952	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835988	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839588	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9843640	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847461	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9847477	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848766	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850127	0.80[EUR][1000 genomes]
rs9851518	0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860854	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9864494	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9874826	0.89[ASN][1000 genomes]
rs9878954	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9880971	0.80[EUR][1000 genomes]
rs9881089	0.80[EUR][1000 genomes]
rs9881850	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9882273	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
3	chr3:17557600-17597200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:17561000-17599000	Weak transcription	Pancreas	Pancrea
5	chr3:17562000-17586800	Weak transcription	A549	lung
6	chr3:17563200-17593400	Weak transcription	Aorta	Aorta
7	chr3:17575000-17607600	Weak transcription	Dnd41	blood
8	chr3:17575000-17613400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:17577000-17586800	Weak transcription	Psoas Muscle	Psoas
10	chr3:17577000-17588800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:17577200-17587000	Weak transcription	Adipose Nuclei	Adipose
12	chr3:17577200-17593000	Weak transcription	Fetal Heart	heart
13	chr3:17580000-17619400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:17580400-17586200	Weak transcription	Right Atrium	heart
15	chr3:17581200-17606200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:17581400-17587000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:17582000-17585400	Weak transcription	Fetal Stomach	stomach
18	chr3:17582000-17588400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:17582800-17584800	Strong transcription	Liver	Liver
20	chr3:17583600-17585400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:17583600-17586600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:17583800-17587000	Strong transcription	Primary B cells from cord blood	blood
23	chr3:17583800-17596800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:17584000-17584600	Weak transcription	Fetal Intestine Small	intestine
25	chr3:17584000-17587400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:17584000-17613200	Weak transcription	GM12878-XiMat	blood
27	chr3:17584200-17599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:17584200-17608600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:17584400-17587200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:17584400-17593600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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