Variant report

Variant	rs9310524
Chromosome Location	chr3:17640706-17640707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17639679..17641354-chr3:17641645..17644689,3	MCF-7	breast:

Extended variants
information (count: 207 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs10433560	0.81[EUR][1000 genomes]
rs10433561	0.85[EUR][1000 genomes]
rs10510475	1.00[ASN][1000 genomes]
rs10510477	0.86[EUR][1000 genomes]
rs10510478	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10865749	1.00[ASN][1000 genomes]
rs11128836	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128837	0.86[EUR][1000 genomes]
rs11128838	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128840	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11128841	0.86[EUR][1000 genomes]
rs11128842	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11128843	0.80[EUR][1000 genomes]
rs11128844	0.84[EUR][1000 genomes]
rs11128848	0.85[EUR][1000 genomes]
rs11128849	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128850	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11128852	0.94[EUR][1000 genomes]
rs1120412	1.00[ASN][1000 genomes]
rs11708391	1.00[ASN][1000 genomes]
rs11708672	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11719266	0.84[EUR][1000 genomes]
rs11719326	0.94[EUR][1000 genomes]
rs11927637	0.83[EUR][1000 genomes]
rs11927654	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11929111	0.84[EUR][1000 genomes]
rs12487248	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487916	0.86[EUR][1000 genomes]
rs12488591	0.82[EUR][1000 genomes]
rs12488687	1.00[ASN][1000 genomes]
rs12490933	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12497320	0.84[EUR][1000 genomes]
rs12631291	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12632570	0.84[EUR][1000 genomes]
rs12634674	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12634893	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13061771	0.85[EUR][1000 genomes]
rs13065637	0.86[EUR][1000 genomes]
rs13069155	0.91[EUR][1000 genomes]
rs13071728	0.86[EUR][1000 genomes]
rs13071934	0.84[EUR][1000 genomes]
rs13076724	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13079096	0.91[EUR][1000 genomes]
rs13083917	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13085167	0.86[EUR][1000 genomes]
rs13096559	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13097908	0.84[EUR][1000 genomes]
rs13320647	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446303	1.00[ASN][1000 genomes]
rs17200818	1.00[ASN][1000 genomes]
rs17200839	1.00[ASN][1000 genomes]
rs2028874	1.00[ASN][1000 genomes]
rs2121262	1.00[ASN][1000 genomes]
rs34002492	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34297417	0.86[EUR][1000 genomes]
rs34485427	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34487714	0.84[EUR][1000 genomes]
rs34786175	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34990533	0.83[EUR][1000 genomes]
rs35460334	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35521582	0.85[ASN][1000 genomes]
rs35642812	0.84[EUR][1000 genomes]
rs35697509	0.84[EUR][1000 genomes]
rs36172181	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4128509	0.86[EUR][1000 genomes]
rs4243835	0.86[EUR][1000 genomes]
rs4243836	0.86[EUR][1000 genomes]
rs4243837	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4243838	0.84[EUR][1000 genomes]
rs4312642	1.00[ASN][1000 genomes]
rs4312680	0.94[EUR][1000 genomes]
rs4349529	0.91[EUR][1000 genomes]
rs4377510	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4408889	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4431138	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4435673	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4435674	0.81[EUR][1000 genomes]
rs4444738	0.85[EUR][1000 genomes]
rs4470554	0.86[EUR][1000 genomes]
rs4482690	0.84[EUR][1000 genomes]
rs4484221	0.86[EUR][1000 genomes]
rs4488868	0.89[EUR][1000 genomes]
rs4513482	0.86[EUR][1000 genomes]
rs4566567	0.85[EUR][1000 genomes]
rs4566568	0.81[EUR][1000 genomes]
rs4568172	0.85[EUR][1000 genomes]
rs4589965	0.86[EUR][1000 genomes]
rs4602424	0.86[EUR][1000 genomes]
rs4611850	0.91[EUR][1000 genomes]
rs4637311	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4643736	0.90[EUR][1000 genomes]
rs4908938	0.94[EUR][1000 genomes]
rs4908940	0.81[EUR][1000 genomes]
rs4908958	0.86[EUR][1000 genomes]
rs4908963	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4908964	0.84[EUR][1000 genomes]
rs4908965	0.94[EUR][1000 genomes]
rs4908966	0.84[EUR][1000 genomes]
rs4908967	0.94[EUR][1000 genomes]
rs4908968	0.93[EUR][1000 genomes]
rs4908969	0.84[EUR][1000 genomes]
rs4908970	0.94[EUR][1000 genomes]
rs4908971	0.94[EUR][1000 genomes]
rs4908972	0.81[EUR][1000 genomes]
rs4908973	0.81[EUR][1000 genomes]
rs4908987	0.86[EUR][1000 genomes]
rs4908992	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4909009	0.86[EUR][1000 genomes]
rs4909010	0.86[EUR][1000 genomes]
rs4909012	0.84[EUR][1000 genomes]
rs5014632	0.86[EUR][1000 genomes]
rs55701200	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56059241	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309958	0.86[EUR][1000 genomes]
rs61081795	0.85[EUR][1000 genomes]
rs61236237	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62245947	0.90[ASN][1000 genomes]
rs6442682	1.00[ASN][1000 genomes]
rs6577616	0.86[EUR][1000 genomes]
rs6577617	0.86[EUR][1000 genomes]
rs6577618	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6577619	0.86[EUR][1000 genomes]
rs6577622	0.86[EUR][1000 genomes]
rs6577643	0.84[EUR][1000 genomes]
rs6577644	0.84[EUR][1000 genomes]
rs6768637	0.86[EUR][1000 genomes]
rs6779834	0.84[EUR][1000 genomes]
rs6780587	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6784025	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789467	0.91[EUR][1000 genomes]
rs6789697	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6792422	0.86[EUR][1000 genomes]
rs6792443	1.00[ASN][1000 genomes]
rs6795189	0.85[EUR][1000 genomes]
rs6796448	0.81[EUR][1000 genomes]
rs6797952	0.86[EUR][1000 genomes]
rs6803312	0.83[EUR][1000 genomes]
rs6804837	0.85[EUR][1000 genomes]
rs6806610	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6807020	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6809062	0.86[EUR][1000 genomes]
rs6810235	0.84[EUR][1000 genomes]
rs7431897	0.81[EUR][1000 genomes]
rs7613953	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7614318	0.90[ASN][1000 genomes]
rs7617683	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7625175	1.00[ASN][1000 genomes]
rs7625855	1.00[ASN][1000 genomes]
rs7627064	0.90[EUR][1000 genomes]
rs7627732	0.94[EUR][1000 genomes]
rs7630695	0.85[EUR][1000 genomes]
rs7632240	0.86[EUR][1000 genomes]
rs7633601	0.86[EUR][1000 genomes]
rs7645459	0.82[EUR][1000 genomes]
rs7647905	1.00[ASN][1000 genomes]
rs7647914	0.85[EUR][1000 genomes]
rs7647928	0.85[EUR][1000 genomes]
rs7650617	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651998	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7652156	0.84[EUR][1000 genomes]
rs7652792	1.00[ASN][1000 genomes]
rs8179891	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8179983	0.84[EUR][1000 genomes]
rs9310516	1.00[ASN][1000 genomes]
rs9310519	1.00[ASN][1000 genomes]
rs9310520	0.85[ASN][1000 genomes]
rs9310526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310528	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9681232	0.84[EUR][1000 genomes]
rs9681617	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9681644	0.83[EUR][1000 genomes]
rs9681893	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9756494	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757339	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813532	1.00[ASN][1000 genomes]
rs9815204	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816920	0.83[EUR][1000 genomes]
rs9820703	1.00[ASN][1000 genomes]
rs9821318	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821955	0.89[EUR][1000 genomes]
rs9823064	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823767	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824952	1.00[ASN][1000 genomes]
rs9835988	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839588	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9843640	0.90[ASN][1000 genomes]
rs9847461	0.86[EUR][1000 genomes]
rs9847477	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848766	1.00[ASN][1000 genomes]
rs9851518	1.00[ASN][1000 genomes]
rs9853571	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9857910	0.86[EUR][1000 genomes]
rs9860854	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9864494	0.95[ASN][1000 genomes]
rs9867064	0.82[EUR][1000 genomes]
rs9874826	0.89[ASN][1000 genomes]
rs9875973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878954	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9880456	0.84[EUR][1000 genomes]
rs9880971	0.89[EUR][1000 genomes]
rs9881089	0.89[EUR][1000 genomes]
rs9882273	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17632400-17640800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:17632400-17643600	Weak transcription	A549	lung
4	chr3:17632400-17646200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:17632400-17646200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:17632400-17646200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:17633000-17641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:17633600-17641000	Weak transcription	Spleen	Spleen
11	chr3:17633600-17659600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:17634200-17647600	Weak transcription	Right Ventricle	heart
14	chr3:17634200-17659800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:17637600-17640800	Weak transcription	Primary B cells from cord blood	blood
16	chr3:17639200-17676800	Weak transcription	Ovary	ovary
17	chr3:17639400-17651600	Weak transcription	Gastric	stomach
18	chr3:17640400-17643600	Weak transcription	NHEK	skin
19	chr3:17640600-17641200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
20	chr3:17640600-17641400	Enhancers	Pancreas	Pancrea
21	chr3:17640600-17642000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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