Variant report

Variant	rs10433560
Chromosome Location	chr3:17803974-17803975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17782372..17784462-chr3:17803222..17806445,3	MCF-7	breast:
2	chr3:17802819..17806567-chr3:17807194..17809749,3	K562	blood:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10433561	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510478	0.83[EUR][1000 genomes]
rs11128836	0.83[EUR][1000 genomes]
rs11128838	0.83[EUR][1000 genomes]
rs11128840	0.81[EUR][1000 genomes]
rs11128842	0.83[EUR][1000 genomes]
rs11128849	0.84[EUR][1000 genomes]
rs11128850	0.84[EUR][1000 genomes]
rs11128852	0.84[EUR][1000 genomes]
rs11128857	0.80[ASN][1000 genomes]
rs11708672	0.83[EUR][1000 genomes]
rs11719326	0.86[EUR][1000 genomes]
rs11927654	0.83[EUR][1000 genomes]
rs12488591	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12490933	0.81[EUR][1000 genomes]
rs12634893	0.83[EUR][1000 genomes]
rs13069155	0.83[EUR][1000 genomes]
rs13076724	0.84[EUR][1000 genomes]
rs13079096	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35460334	0.84[EUR][1000 genomes]
rs35811992	0.81[AFR][1000 genomes]
rs36172181	0.83[EUR][1000 genomes]
rs4243837	0.83[EUR][1000 genomes]
rs4260468	0.80[ASN][1000 genomes]
rs4312680	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4349529	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4377510	0.83[EUR][1000 genomes]
rs4408889	0.83[EUR][1000 genomes]
rs4422341	0.80[ASN][1000 genomes]
rs4435673	0.84[EUR][1000 genomes]
rs4435674	0.80[EUR][1000 genomes]
rs4488868	0.81[EUR][1000 genomes]
rs4566568	0.80[EUR][1000 genomes]
rs4611850	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4637311	0.81[EUR][1000 genomes]
rs4643736	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908938	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4908940	0.80[EUR][1000 genomes]
rs4908965	0.84[EUR][1000 genomes]
rs4908967	0.84[EUR][1000 genomes]
rs4908968	0.84[EUR][1000 genomes]
rs4908970	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908971	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908972	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4908973	0.80[EUR][1000 genomes]
rs4908976	0.80[ASN][1000 genomes]
rs56059241	0.83[EUR][1000 genomes]
rs6577618	0.83[EUR][1000 genomes]
rs6780587	0.83[EUR][1000 genomes]
rs6784025	0.83[EUR][1000 genomes]
rs6789467	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796448	0.80[EUR][1000 genomes]
rs6806610	0.83[EUR][1000 genomes]
rs6807020	0.82[EUR][1000 genomes]
rs6809775	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7427588	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7609916	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7613953	0.84[EUR][1000 genomes]
rs7627064	0.80[EUR][1000 genomes]
rs7627732	0.86[EUR][1000 genomes]
rs7645459	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7650617	0.83[EUR][1000 genomes]
rs7651998	0.83[EUR][1000 genomes]
rs8179891	0.82[EUR][1000 genomes]
rs9310524	0.81[EUR][1000 genomes]
rs9310526	0.80[EUR][1000 genomes]
rs9815204	0.81[EUR][1000 genomes]
rs9823767	0.81[EUR][1000 genomes]
rs9839588	0.81[EUR][1000 genomes]
rs9847477	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17801800-17804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:17802000-17804600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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