Variant report

Variant	rs11128857
Chromosome Location	chr3:17814553-17814554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17798340..17801167-chr3:17812081..17815793,3	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1004307	0.85[ASN][1000 genomes]
rs10428172	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10428260	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10433560	0.80[ASN][1000 genomes]
rs10433561	0.85[ASN][1000 genomes]
rs10510478	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11128836	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128855	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128858	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128871	0.82[EUR][1000 genomes]
rs11709941	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11914537	0.85[CHB][hapmap]
rs11915560	0.85[CHB][hapmap]
rs11921152	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11923589	0.85[CHB][hapmap]
rs11923635	0.85[CHB][hapmap]
rs11925066	0.85[CHB][hapmap]
rs11927436	0.85[CHB][hapmap]
rs11927654	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12106899	0.85[CHB][hapmap]
rs12106900	0.85[CHB][hapmap]
rs12492504	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12495352	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13071301	0.84[EUR][1000 genomes]
rs13076724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13076950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1469558	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17044053	0.85[CHB][hapmap]
rs17044072	0.85[CHB][hapmap]
rs17200916	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17200979	0.88[CEU][hapmap]
rs17273111	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs2033378	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2033379	0.96[CEU][hapmap]
rs2337387	0.84[CEU][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs34146452	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243833	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4260468	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4312680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4377510	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4404476	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4422341	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487265	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4611850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4616675	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4632574	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4637311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908941	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908965	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908976	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908981	0.80[EUR][1000 genomes]
rs4908988	0.85[ASN][1000 genomes]
rs59650576	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6577597	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs6771673	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6780932	0.85[ASN][1000 genomes]
rs6784025	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6789467	0.90[ASN][1000 genomes]
rs6794859	0.85[ASN][1000 genomes]
rs6802932	0.85[ASN][1000 genomes]
rs6807020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7428585	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7619879	0.85[CHB][hapmap]
rs7627732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642860	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7645459	0.90[ASN][1000 genomes]
rs7651998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8179891	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310526	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9823767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9839588	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11128857	OXNAD1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17813000-17816400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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