Variant report

Variant	rs17200979
Chromosome Location	chr3:17877828-17877829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17877075..17879105-chr3:17879381..17882194,3	K562	blood:
2	chr3:17871518..17874022-chr3:17877540..17880221,3	K562	blood:
3	chr3:17782446..17785173-chr3:17877663..17879320,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1004307	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128871	0.85[EUR][1000 genomes]
rs12495352	0.85[EUR][1000 genomes]
rs13062642	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13071301	0.83[EUR][1000 genomes]
rs1430896	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1430904	0.85[EUR][1000 genomes]
rs1469558	0.82[EUR][1000 genomes]
rs17200916	0.83[EUR][1000 genomes]
rs17273111	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2033373	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2033374	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2033377	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2033378	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2033379	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2337387	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28796017	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4243834	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4260468	0.85[CEU][hapmap]
rs4330281	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4450852	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908942	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908978	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908979	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908981	0.87[EUR][1000 genomes]
rs4908982	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908984	0.88[EUR][1000 genomes]
rs4908985	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4908986	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908988	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6577597	0.96[CEU][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6577598	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6771673	0.87[EUR][1000 genomes]
rs6780932	0.90[EUR][1000 genomes]
rs6787380	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6794859	0.89[EUR][1000 genomes]
rs6802932	0.89[EUR][1000 genomes]
rs6804677	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7632834	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7633898	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7642860	0.89[CEU][hapmap]
rs919562	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9862290	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17873000-17882600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:17874000-17878200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:17874200-17878200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:17875600-17882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:17877800-17878800	Active TSS	Right Atrium	heart
6	chr3:17877800-17879800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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