Variant report

Variant	rs17200916
Chromosome Location	chr3:17844752-17844753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17843575..17846389-chr3:17850331..17852349,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1004307	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10428260	0.84[EUR][1000 genomes]
rs11128857	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11128871	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12492504	0.85[EUR][1000 genomes]
rs12495352	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062642	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13071301	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13076950	0.84[EUR][1000 genomes]
rs1430896	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1430904	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1469558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200979	0.83[EUR][1000 genomes]
rs17273111	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033373	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033374	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033377	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033379	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2337387	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28796017	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243833	0.84[EUR][1000 genomes]
rs4243834	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4260468	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4330281	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4422341	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4450852	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4632574	0.85[EUR][1000 genomes]
rs4908942	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908976	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4908978	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908979	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908981	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908982	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908984	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4908985	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4908986	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908988	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6577597	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577598	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6771673	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6780932	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6787380	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6794859	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6802932	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804677	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7428585	0.84[EUR][1000 genomes]
rs7632834	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7633898	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs919562	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9862290	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17835200-17847400	Weak transcription	Dnd41	blood
2	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:17844000-17845000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:17844000-17845200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:17844200-17845200	Enhancers	GM12878-XiMat	blood
6	chr3:17844400-17845000	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:17844600-17845000	Enhancers	Primary B cells from cord blood	blood
8	chr3:17844600-17845000	Enhancers	Primary hematopoietic stem cells	blood

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