Variant report

Variant	rs6804677
Chromosome Location	chr3:17856693-17856694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17856634..17858275-chr3:17861153..17864050,2	K562	blood:
2	chr3:17850838..17853208-chr3:17856384..17858538,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1004307	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10510477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128871	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12495352	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12497320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13062642	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13071301	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13085167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13097908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1430896	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430904	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1469558	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17200916	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17200979	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17273111	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2033374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033376	0.84[AMR][1000 genomes]
rs2033377	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033378	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2033379	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2337387	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28796017	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243834	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4243835	1.00[JPT][hapmap]
rs4243836	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4260468	0.80[CEU][hapmap]
rs4330281	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435674	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4450852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4484221	1.00[CHB][hapmap]
rs4487265	0.80[EUR][1000 genomes]
rs4513482	1.00[JPT][hapmap]
rs4566567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4566568	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4568172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4602424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4616675	0.80[EUR][1000 genomes]
rs4908939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908942	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908978	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908981	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908982	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908984	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4908985	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908986	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4908988	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4909012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5014632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577597	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577598	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6577616	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577644	1.00[CHB][hapmap]
rs6768637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6771673	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6780932	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6787380	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6794859	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6795189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6802932	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6809062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6810235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7427588	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7632240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7632834	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633898	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7642860	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7652156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8179983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs919562	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9862290	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9985472	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17851400-17861000	Weak transcription	Right Atrium	heart
2	chr3:17855800-17860600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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