Variant report

Variant	rs6577598
Chromosome Location	chr3:17885531-17885532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17879314..17881796-chr3:17883839..17885883,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1004307	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128871	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495352	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13062642	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13071301	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1430896	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1430904	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1469558	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17200916	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17200979	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17273111	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2033373	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2033374	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2033377	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2033378	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2033379	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2337387	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28796017	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243834	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4330281	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4450852	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908942	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908978	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908979	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908981	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4908982	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908984	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4908985	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908986	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4908988	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577597	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6771673	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6780932	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6787380	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6794859	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6802932	0.87[EUR][1000 genomes]
rs6804677	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7632834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7633898	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs919562	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9862290	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17882800-17887800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:17882800-17888800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:17883000-17886400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:17883400-17887600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:17884400-17886400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:17884800-17885600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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