Variant report

Variant	rs13071301
Chromosome Location	chr3:17845412-17845413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17843575..17846389-chr3:17850331..17852349,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1004307	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10428260	0.84[EUR][1000 genomes]
rs11128857	0.84[EUR][1000 genomes]
rs11128871	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12492504	0.85[EUR][1000 genomes]
rs12495352	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13062642	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13076950	0.84[EUR][1000 genomes]
rs1430896	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1430904	0.89[EUR][1000 genomes]
rs1469558	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17200916	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17200979	0.83[EUR][1000 genomes]
rs17273111	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033373	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033374	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033377	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033378	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2033379	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2337387	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28796017	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243833	0.84[EUR][1000 genomes]
rs4243834	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4260468	0.82[EUR][1000 genomes]
rs4330281	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4422341	0.84[EUR][1000 genomes]
rs4450852	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4632574	0.85[EUR][1000 genomes]
rs4908942	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908976	0.85[EUR][1000 genomes]
rs4908978	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908979	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908981	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4908982	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4908984	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4908985	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4908986	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4908988	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6577597	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6577598	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6771673	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6780932	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6787380	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6794859	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6802932	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6804677	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7428585	0.84[EUR][1000 genomes]
rs7632834	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7633898	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs919562	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9862290	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17835200-17847400	Weak transcription	Dnd41	blood
2	chr3:17843000-17850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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