Variant report

Variant	rs7428585
Chromosome Location	chr3:17828106-17828107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10428172	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10428260	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128855	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11128857	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11128858	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11128871	0.82[EUR][1000 genomes]
rs11709941	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11921152	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12492504	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495352	0.82[EUR][1000 genomes]
rs13071301	0.84[EUR][1000 genomes]
rs13076950	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1469558	0.85[EUR][1000 genomes]
rs17200916	0.84[EUR][1000 genomes]
rs17200979	0.89[CEU][hapmap]
rs17273111	0.88[CEU][hapmap]
rs2033378	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2033379	0.96[CEU][hapmap]
rs2337387	0.84[CEU][hapmap]
rs34146452	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4243833	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4260468	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4404476	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4422341	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4487265	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4616675	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4632574	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908941	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908976	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908981	0.80[EUR][1000 genomes]
rs59650576	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6577597	0.84[CEU][hapmap]
rs6771673	0.80[EUR][1000 genomes]
rs7642860	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17825800-17828400	Weak transcription	Dnd41	blood
2	chr3:17828000-17828400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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