Variant report

Variant	rs11709941
Chromosome Location	chr3:17822644-17822645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17822522..17824508-chr3:17834852..17837057,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10428172	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428260	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11128855	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128857	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11128858	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921152	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492504	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13076950	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17200979	0.92[CEU][hapmap]
rs17273111	0.92[CEU][hapmap]
rs2033378	0.92[CEU][hapmap]
rs2033379	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2337387	0.88[CEU][hapmap]
rs34146452	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243833	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4260468	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4404476	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4422341	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4487265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632574	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4908941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908976	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59650576	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6577596	1.00[ASN][1000 genomes]
rs6577597	0.88[CEU][hapmap]
rs7428585	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7642860	0.96[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919562	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17816400-17823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:17821000-17822800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:17821800-17822800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:17821800-17823400	Weak transcription	Dnd41	blood
5	chr3:17822600-17822800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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