Variant report

Variant	rs59650576
Chromosome Location	chr3:17816895-17816896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10428172	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428260	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11128855	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11128857	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11128858	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11709941	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11921152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12492504	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13076950	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2033379	0.81[EUR][1000 genomes]
rs34146452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4243833	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4260468	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4404476	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4422341	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4487265	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4616675	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4632574	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4908941	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4908976	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7428585	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7642860	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs919562	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17815600-17817200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17815600-17818000	Flanking Active TSS	Dnd41	blood
3	chr3:17815800-17818000	Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr3:17816000-17817000	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr3:17816400-17817200	Active TSS	Primary B cells from cord blood	blood
6	chr3:17816400-17823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:17816600-17817000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:17816600-17817000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr3:17816800-17817000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr3:17816800-17817000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:17816800-17820800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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